J5_9E1S_008
3D structure
- PDB id
- 9E1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- UUCA*UUUA*UG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9E1S|1|I|C|2313, 9E1S|1|I|G|2666, 9E1S|1|I|G|2667, 9E1S|1|I|A|2668, 9E1S|1|I|U|2669
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9E1S_008 not in the Motif Atlas
- Homologous match to J5_8B0X_009
- Geometric discrepancy: 0.1313
- The information below is about J5_8B0X_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9E1S|1|I|U|2311
9E1S|1|I|U|2312
9E1S|1|I|C|2313
9E1S|1|I|A|2314
*
9E1S|1|I|U|2481
9E1S|1|I|U|2482
9E1S|1|I|U|2483
9E1S|1|I|A|2484
*
9E1S|1|I|U|2496
9E1S|1|I|G|2497
*
9E1S|1|I|C|2519
9E1S|1|I|G|2520
*
9E1S|1|I|C|2665
9E1S|1|I|G|2666
9E1S|1|I|G|2667
9E1S|1|I|A|2668
9E1S|1|I|U|2669
9E1S|1|I|A|2670
9E1S|1|I|A|2671
9E1S|1|I|A|2672
9E1S|1|I|A|2673
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain y
- 50S ribosomal protein bL28-c minus
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