J5_9F9S_013
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 9F9S|1|R1|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9F9S_013 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.0803
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
9F9S|1|R1|C|31
9F9S|1|R1|U|32
9F9S|1|R1|U|33
9F9S|1|R1|G|34
9F9S|1|R1|U|35
*
9F9S|1|R1|A|473
9F9S|1|R1|A|474
9F9S|1|R1|A|475
9F9S|1|R1|U|476
9F9S|1|R1|A|477
9F9S|1|R1|A|478
9F9S|1|R1|C|479
*
9F9S|1|R1|G|509
9F9S|1|R1|G|510
9F9S|1|R1|A|511
9F9S|1|R1|A|512
9F9S|1|R1|U|513
9F9S|1|R1|G|514
*
9F9S|1|R1|C|543
9F9S|1|R1|A|544
9F9S|1|R1|A|545
9F9S|1|R1|U|546
*
9F9S|1|R1|A|592
9F9S|1|R1|U|593
9F9S|1|R1|A|594
9F9S|1|R1|G|595
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain CN
- Multiprotein-bridging factor 1
- Chain RE
- 40S ribosomal protein S30-A
- Chain Rj
- 40S ribosomal protein S9-A
- Chain Rx
- 40S ribosomal protein S23-A
Coloring options: