J5_9GFT_008
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9GFT|1|AV|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9GFT_008 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0919
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9GFT|1|AV|C|584
9GFT|1|AV|G|585
9GFT|1|AV|A|586
9GFT|1|AV|C|587
9GFT|1|AV|U|588
9GFT|1|AV|U|589
*
9GFT|1|AV|A|668
9GFT|1|AV|G|669
9GFT|1|AV|A|670
9GFT|1|AV|C|671
*
9GFT|1|AV|G|809
9GFT|1|AV|U|810
9GFT|1|AV|U|811
9GFT|1|AV|C|812
*
9GFT|1|AV|G|1195
9GFT|1|AV|C|1196
*
9GFT|1|AV|G|1250
9GFT|1|AV|C|1251
9GFT|1|AV|G|1252
9GFT|1|AV|A|1253
9GFT|1|AV|A|1254
9GFT|1|AV|U|1255
9GFT|1|AV|G|1256
Current chains
- Chain AV
- 23S RNA
Nearby chains
- Chain AZ
- Large ribosomal subunit protein uL4
- Chain Ag
- Large ribosomal subunit protein uL15
- Chain Al
- Large ribosomal subunit protein bL20
- Chain Am
- Large ribosomal subunit protein bL21
- Chain Ay
- Large ribosomal subunit protein bL35
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