J5_9H3O_002

3D structure

PDB id

9H3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-_GAC

Experimental method

ELECTRON MICROSCOPY

Resolution

4.54 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

9H3O|1|A|A|532, 9H3O|1|A|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9H3O_002 not in the Motif Atlas

Homologous match to J5_9DFE_003

Geometric discrepancy: 0.1747

The information below is about J5_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9H3O|1|A|C|531
9H3O|1|A|A|532
9H3O|1|A|G|533
*
9H3O|1|A|C|560
9H3O|1|A|G|561
9H3O|1|A|U|562
9H3O|1|A|A|563
9H3O|1|A|C|564
*
9H3O|1|A|G|577
9H3O|1|A|G|578
9H3O|1|A|G|579
*
9H3O|1|A|C|1261
9H3O|1|A|A|1262
*
9H3O|1|A|U|2017
9H3O|1|A|G|2018

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21