J5_9HA6_006

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

9HA6|1|A|U|2076, 9HA6|1|A|G|2428, 9HA6|1|A|G|2429, 9HA6|1|A|A|2430, 9HA6|1|A|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9HA6_006 not in the Motif Atlas

Homologous match to J5_4WF9_007

Geometric discrepancy: 0.1453

The information below is about J5_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9HA6|1|A|U|2074
9HA6|1|A|U|2075
9HA6|1|A|U|2076
9HA6|1|A|A|2077
*
9HA6|1|A|U|2243
9HA6|1|A|U|2244
9HA6|1|A|U|2245
9HA6|1|A|G|2246
*
9HA6|1|A|C|2258
9HA6|1|A|U|2259
*
9HA6|1|A|A|2281
9HA6|1|A|G|2282
*
9HA6|1|A|C|2427
9HA6|1|A|G|2428
9HA6|1|A|G|2429
9HA6|1|A|A|2430
9HA6|1|A|U|2431
9HA6|1|A|A|2432
9HA6|1|A|A|2433
9HA6|1|A|A|2434
9HA6|1|A|A|2435

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL33

Chain 3

Large ribosomal subunit protein bL35

Chain C

Large ribosomal subunit protein uL2

Chain L

Large ribosomal subunit protein uL15

Chain W

Large ribosomal subunit protein bL27

Chain X

Large ribosomal subunit protein bL28