J5_9HLZ_001

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAA*UGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

9HLZ|1|AA|A|429, 9HLZ|1|AA|U|461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9HLZ_001 not in the Motif Atlas

Homologous match to J5_7A0S_003

Geometric discrepancy: 0.1787

The information below is about J5_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.6

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9HLZ|1|AA|C|428
9HLZ|1|AA|A|429
9HLZ|1|AA|A|430
*
9HLZ|1|AA|U|459
9HLZ|1|AA|G|460
9HLZ|1|AA|U|461
9HLZ|1|AA|A|462
9HLZ|1|AA|C|463
*
9HLZ|1|AA|G|476
9HLZ|1|AA|G|477
9HLZ|1|AA|G|478
*
9HLZ|1|AA|C|1294
9HLZ|1|AA|A|1295
*
9HLZ|1|AA|U|1917
9HLZ|1|AA|G|1918

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain DD

Large ribosomal subunit protein uL4m

Chain HH

Large ribosomal subunit protein uL13m

Chain NN

Large ribosomal subunit protein bL21m

Chain OO

Large ribosomal subunit protein uL22m

Chain WW

Large ribosomal subunit protein bL32m