J5_9I3L_002
3D structure
- PDB id
- 9I3L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 9I3L|1|b|A|532, 9I3L|1|b|U|564
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9I3L_002 not in the Motif Atlas
- Homologous match to J5_7A0S_003
- Geometric discrepancy: 0.1847
- The information below is about J5_7A0S_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9I3L|1|b|C|531
9I3L|1|b|A|532
9I3L|1|b|G|533
*
9I3L|1|b|C|562
9I3L|1|b|G|563
9I3L|1|b|U|564
9I3L|1|b|A|565
9I3L|1|b|C|566
*
9I3L|1|b|G|579
9I3L|1|b|G|580
9I3L|1|b|G|581
*
9I3L|1|b|C|1263
9I3L|1|b|A|1264
*
9I3L|1|b|U|2021
9I3L|1|b|G|2022
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL32
- Chain e
- Large ribosomal subunit protein uL4
- Chain q
- Large ribosomal subunit protein bL20
- Chain r
- Large ribosomal subunit protein bL21
- Chain s
- Large ribosomal subunit protein uL22
Coloring options: