J5_9NJV_002

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

9NJV|1|R1|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9NJV_002 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.086

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9NJV|1|R1|C|584
9NJV|1|R1|G|585
9NJV|1|R1|A|586
9NJV|1|R1|C|587
9NJV|1|R1|U|588
9NJV|1|R1|U|589
*
9NJV|1|R1|A|668
9NJV|1|R1|G|669
9NJV|1|R1|A|670
9NJV|1|R1|C|671
*
9NJV|1|R1|G|809
9NJV|1|R1|U|810
9NJV|1|R1|U|811
9NJV|1|R1|C|812
*
9NJV|1|R1|G|1195
9NJV|1|R1|C|1196
*
9NJV|1|R1|G|1250
9NJV|1|R1|C|1251
9NJV|1|R1|G|1252
9NJV|1|R1|A|1253
9NJV|1|R1|A|1254
9NJV|1|R1|U|1255
9NJV|1|R1|G|1256

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 20

Large ribosomal subunit protein bL20

Chain 21

Large ribosomal subunit protein bL21

Chain 35

Large ribosomal subunit protein bL35

Chain 4

Large ribosomal subunit protein uL4