J5_9Q3R_002
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 9Q3R|1|A|A|532, 9Q3R|1|A|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9Q3R_002 not in the Motif Atlas
- Homologous match to J5_8B0X_005
- Geometric discrepancy: 0.0373
- The information below is about J5_8B0X_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9Q3R|1|A|C|531
9Q3R|1|A|A|532
9Q3R|1|A|G|533
*
9Q3R|1|A|C|560
9Q3R|1|A|G|561
9Q3R|1|A|U|562
9Q3R|1|A|A|563
9Q3R|1|A|C|564
*
9Q3R|1|A|G|577
9Q3R|1|A|G|578
9Q3R|1|A|G|579
*
9Q3R|1|A|C|1261
9Q3R|1|A|A|1262
*
9Q3R|1|A|U|2017
9Q3R|1|A|G|2018
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain E
- Large ribosomal subunit protein uL4
- Chain S
- 50S ribosomal protein L20
- Chain T
- Ribosomal protein L21
- Chain U
- 50S ribosomal protein L22
Coloring options: