J5_9Q3R_006

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

9Q3R|1|A|U|2076, 9Q3R|1|A|G|2428, 9Q3R|1|A|G|2429, 9Q3R|1|A|A|2430, 9Q3R|1|A|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9Q3R_006 not in the Motif Atlas

Homologous match to J5_8B0X_009

Geometric discrepancy: 0.0378

The information below is about J5_8B0X_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9Q3R|1|A|U|2074
9Q3R|1|A|U|2075
9Q3R|1|A|U|2076
9Q3R|1|A|A|2077
*
9Q3R|1|A|U|2243
9Q3R|1|A|U|2244
9Q3R|1|A|U|2245
9Q3R|1|A|G|2246
*
9Q3R|1|A|C|2258
9Q3R|1|A|U|2259
*
9Q3R|1|A|A|2281
9Q3R|1|A|G|2282
*
9Q3R|1|A|C|2427
9Q3R|1|A|G|2428
9Q3R|1|A|G|2429
9Q3R|1|A|A|2430
9Q3R|1|A|U|2431
9Q3R|1|A|A|2432
9Q3R|1|A|A|2433
9Q3R|1|A|A|2434
9Q3R|1|A|A|2435

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L33

Chain 7

50S ribosomal protein L35

Chain C

50S ribosomal protein L2

Chain N

50S ribosomal protein L15

Chain Y

50S ribosomal protein L27

Chain Z

50S ribosomal protein L28