J5_9T4R_007
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9T4R|1|a|G|1783, 9T4R|1|a|G|1788
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9T4R_007 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.1255
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9T4R|1|a|G|1716
9T4R|1|a|C|1717
9T4R|1|a|A|1718
9T4R|1|a|A|1719
9T4R|1|a|A|1720
9T4R|1|a|A|1721
9T4R|1|a|U|1722
9T4R|1|a|G|1723
9T4R|1|a|A|1724
*
9T4R|1|a|U|1748
9T4R|1|a|G|1749
*
9T4R|1|a|C|1776
9T4R|1|a|C|1777
*
9T4R|1|a|G|1781
9T4R|1|a|U|1782
9T4R|1|a|G|1783
9T4R|1|a|A|1784
9T4R|1|a|A|1785
9T4R|1|a|U|1786
9T4R|1|a|A|1787
9T4R|1|a|G|1788
9T4R|1|a|G|1789
*
9T4R|1|a|C|2013
9T4R|1|a|A|2014
9T4R|1|a|C|2015
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain U
- Large ribosomal subunit protein uL14
- Chain d
- Large ribosomal subunit protein uL3
- Chain o
- Large ribosomal subunit protein bL19
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