J5_9UZK_001

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

9UZK|1|2|U|32, 9UZK|1|2|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|C|30
9UZK|1|2|U|31
9UZK|1|2|U|32
9UZK|1|2|G|33
9UZK|1|2|U|34
*
9UZK|1|2|A|511
9UZK|1|2|A|512
9UZK|1|2|A|513
9UZK|1|2|U|514
9UZK|1|2|A|515
9UZK|1|2|A|516
9UZK|1|2|C|517
*
9UZK|1|2|G|548
9UZK|1|2|G|549
9UZK|1|2|A|550
9UZK|1|2|A|551
9UZK|1|2|U|552
9UZK|1|2|G|553
*
9UZK|1|2|C|582
9UZK|1|2|C|583
9UZK|1|2|A|584
9UZK|1|2|U|585
*
9UZK|1|2|A|631
9UZK|1|2|U|632
9UZK|1|2|A|633
9UZK|1|2|G|634

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS4

Chain Z

Small ribosomal subunit protein uS12

Chain i

Small ribosomal subunit protein eS30