J5_9W0N_006
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9W0N|1|1|U|2076, 9W0N|1|1|G|2428, 9W0N|1|1|G|2429, 9W0N|1|1|A|2430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9W0N_006 not in the Motif Atlas
- Homologous match to J5_8B0X_009
- Geometric discrepancy: 0.1512
- The information below is about J5_8B0X_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9W0N|1|1|U|2074
9W0N|1|1|U|2075
9W0N|1|1|U|2076
9W0N|1|1|A|2077
*
9W0N|1|1|U|2243
9W0N|1|1|U|2244
9W0N|1|1|U|2245
9W0N|1|1|G|2246
*
9W0N|1|1|C|2258
9W0N|1|1|U|2259
*
9W0N|1|1|A|2281
9W0N|1|1|G|2282
*
9W0N|1|1|C|2427
9W0N|1|1|G|2428
9W0N|1|1|G|2429
9W0N|1|1|A|2430
9W0N|1|1|U|2431
9W0N|1|1|A|2432
9W0N|1|1|A|2433
9W0N|1|1|A|2434
9W0N|1|1|A|2435
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain C
- Large ribosomal subunit protein bL33
- Chain E
- Large ribosomal subunit protein bL35
- Chain b
- Large ribosomal subunit protein uL2
- Chain l
- Large ribosomal subunit protein uL15
- Chain w
- Large ribosomal subunit protein bL27
- Chain x
- Large ribosomal subunit protein bL28
Coloring options: