#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 61-62-5
1 HL_1U9S_0011U9S0.35431GNRAARIBONUCLEASE PG84U85A86A87C88C90cWW
2 HL_3Q1Q_0023Q1Q0.00001BRNase P RNAG77U78A79A80C81C83cWW
3 HL_3P49_0023P490.32011AGlycine riboswitchG41U42A43A44A45C47cWWtWH
4 HL_4BPP_0034BPP0.85141A18S RRNAC148U149A150A151U152G154cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUAACGC2
GUAAAUC1
CUAAUUG1
Non-Watson-Crick part of the motif
SequenceCounts
UAACG2
UAAAU1
UAAUU1

Release history

Release1.51.61.71.81.91.101.111.121.131.141.15
Date2013-08-032013-08-312013-09-282013-11-042013-12-072014-01-042014-02-012014-03-012014-03-292014-04-272014-06-15
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in HL_98523.2Only in the parent motif
HL_98523.1
Compare
HL_3Q1Q_002, HL_3P49_002, HL_1U9S_001HL_4BPP_003HL_2XZM_003

Children motifs

Child motifCommon motif instancesOnly in HL_98523.2Only in the child motif
HL_00415.1
Compare
HL_3Q1Q_002, HL_3P49_002, HL_1U9S_001HL_4BPP_003HL_1VX2_003, HL_1VWW_023
HL_67042.15
Compare
HL_4BPP_003HL_3Q1Q_002, HL_3P49_002, HL_1U9S_001HL_2OIU_002, HL_4A1B_017, HL_2OIU_001, HL_2OIU_006, HL_4A1B_013, HL_2OIU_004, HL_4A1B_011, HL_4CUV_013, HL_3J7A_013, HL_1M5O_004, HL_2Y9B_002, HL_4A1B_018, HL_1VW3_049, HL_1VWW_037, HL_1KH6_002, HL_488D_002, HL_1VWW_033, HL_4A1C_006, HL_4CUV_030, HL_1VX6_071, HL_4B5R_002, HL_4B5R_003, HL_4ENB_002, HL_2XXA_002, HL_4A1B_010, HL_3IWN_001, HL_1S72_054, HL_4K27_001, HL_4LCK_004, HL_4FAW_003, HL_1VWW_065, HL_4CUV_025, HL_1VX2_022, HL_1VX2_023, HL_1VX2_025, HL_4NVV_056, HL_1VX2_027, HL_4IOA_062, HL_4IOA_063, HL_2AW7_022, HL_3U5H_033, HL_3NPN_001, HL_1VX2_014, HL_3J7A_007, HL_3CUN_001, HL_3J7A_002, HL_3W3S_003, HL_3U5H_047, HL_2OIU_003, HL_2Y9B_001, HL_4A1B_065, HL_1KXK_001, HL_1FJG_007, HL_1HMH_001, HL_1VX6_065, HL_3U5H_048, HL_1HMH_002, HL_2QBG_021, HL_1S72_040, HL_2EZ6_001, HL_4NVV_033, HL_4BPP_015, HL_3KTW_002, HL_1S72_045, HL_2QBG_028, HL_1S72_048, HL_4NVV_026, HL_4CUV_036, HL_3IAB_001, HL_1FJG_022, HL_2AW7_019, HL_1FJG_020, HL_1FJG_027, HL_3J7A_019, HL_4NVV_062, HL_2AW7_013, HL_4IOA_015, HL_1FJG_028, HL_4NVV_069, HL_1Q96_003, HL_1Q96_001, HL_1VWW_019, HL_1MFQ_001, HL_1MFQ_002, HL_3NKB_002, HL_4NVV_044, HL_1VWW_011, HL_1VWW_010, HL_1VWW_012, HL_1FJG_019, HL_4C7O_001, HL_3U5H_013, HL_1VX6_059, HL_1VW3_027, HL_4PLX_001, HL_1VW3_055, HL_4PLX_003, HL_3SUX_002, HL_1U9S_002, HL_2QBG_036, HL_4BPP_024, HL_1VX2_008, HL_3U5H_030, HL_1S72_033, HL_3U5H_036, HL_4CUV_048, HL_4CUV_047, HL_4CUX_025, HL_3U5H_039, HL_4BPP_028, HL_1VX2_004, HL_3NVI_001, HL_1FJG_032, HL_2QBG_066, HL_3MOJ_001, HL_2EZ6_002, HL_4NVV_061, HL_2AW7_003, HL_2AW7_004, HL_3AM1_002, HL_2AW7_007, HL_3UCZ_001, HL_4KQY_002, HL_4CUV_060, HL_4BW0_001, HL_1VX2_012, HL_3GX5_002, HL_2ZZM_003, HL_4A1B_046, HL_1VX6_047, HL_3Q1Q_006, HL_4BPP_032, HL_3U5H_011, HL_4BPP_036, HL_1VW3_018, HL_3U5H_010, HL_4P8Z_003, HL_2BTE_003, HL_1S72_020, HL_3U5H_025, HL_4P8Z_005, HL_3GX5_003, HL_1S72_028, HL_4JF2_001, HL_2AW7_016, HL_4P9R_004, HL_4IOA_030, HL_4IOA_033, HL_2QBZ_001, HL_1FJG_003, HL_4FAW_006, HL_2QBG_049, HL_2BTE_007, HL_2QBG_016, HL_3T4B_001, HL_2AW7_032, HL_488D_001, HL_1VW3_009, HL_4IOA_057, HL_4NVV_019, HL_4NVV_045, HL_4AOB_003, HL_4AOB_002, HL_4PQV_001, HL_1VX6_035, HL_3ADC_003, HL_1JID_001, HL_3U5H_065, HL_1VWW_072, HL_1S72_015, HL_3U5H_066, HL_1S72_017, HL_3P22_005, HL_3RG5_003, HL_3U5H_017, HL_3U5H_016, HL_4CUV_065, HL_2HO7_004, HL_3U5F_015, HL_4CUV_066, HL_4NVV_014, HL_1FJG_013, HL_1FJG_010, HL_1UN6_004, HL_3RW6_001, HL_1LNG_002, HL_4IOA_026, HL_1Y0Q_007, HL_1Y0Q_004, HL_1Y0Q_003, HL_2AW7_024, HL_1Y0Q_001, HL_2QBG_059, HL_2AW7_028, HL_3U5F_025, HL_4CUX_037, HL_4L81_001, HL_1GID_004, HL_4L81_003, HL_4L81_004, HL_4CUV_023, HL_4A1B_029, HL_3U5H_019, HL_1VWW_030, HL_4A1B_026, HL_1VW3_034, HL_1U6B_004, HL_1U6B_001, HL_4A1B_020, HL_4BPP_009, HL_4UN3_003, HL_3AM1_003, HL_1VX6_020, HL_2NZ4_012, HL_1VX2_029, HL_3J7A_021, HL_1VWW_064, HL_1VX6_029, HL_1U9S_004, HL_4GMA_004, HL_4CUV_074, HL_3U5F_003, HL_2IL9_003, HL_1S72_070, HL_1S72_009, HL_1S72_023, HL_3DVZ_001, HL_2QBG_065, HL_4CUX_026, HL_4UN5_001, HL_3Q1Q_008, HL_4CUX_022, HL_3Q1Q_003, HL_3Q1Q_001, HL_1X8W_001, HL_4NVV_015, HL_1X8W_003, HL_3Q1Q_004, HL_1VX6_010, HL_4CUV_033, HL_4FNJ_001, HL_4IOA_070, HL_3U5F_029, HL_3P22_007, HL_1VX6_011, HL_4A1B_035, HL_2NZ4_016, HL_1VX6_017, HL_1RLG_002, HL_3V7E_006, HL_4UN5_003, HL_3J7A_034, HL_3J7A_030, HL_4K50_001, HL_4OO8_001, HL_4K50_003, HL_3E5C_002, HL_1MZP_001, HL_2QBG_071, HL_3E5C_001, HL_4IOA_014, HL_1X8W_005, HL_3U5F_037, HL_3U5H_074, HL_4IOA_046, HL_4NVV_030, HL_4A1B_059, HL_1S72_072, HL_1GID_001, HL_2AW7_020, HL_4P9R_006, HL_1NBS_007, HL_4CUV_011, HL_4FRG_002, HL_4CUV_010, HL_4CUX_033, HL_4IOA_005, HL_2OIU_005, HL_3U5F_026, HL_4OO8_003, HL_4LVZ_002, HL_4BPP_025, HL_4IOA_068, HL_1VX6_032, HL_1VW3_054, HL_1S72_036, HL_3D0U_004, HL_1FJG_024, HL_4IOA_019, HL_1VWW_040, HL_1G1X_001, HL_1FJG_016, HL_4NVV_067, HL_3J7A_022, HL_4CUV_019, HL_3U5F_022, HL_4BPP_021, HL_1VWW_048, HL_3U5H_060, HL_2QBG_033, HL_1VX6_064, HL_2QBG_048, HL_3U5F_033, HL_4CUX_015, HL_1VX6_025, HL_1S72_060, HL_4CUX_003, HL_1S72_065, HL_1S72_066, HL_2QBG_060, HL_1VX2_033, HL_1G1X_003, HL_2AW7_010, HL_4CUV_016, HL_4CUV_017, HL_2PXV_001, HL_4A1B_064
Annotations
  • (3)
  • GNRA (1)
  • Basepair signature
    cWW-R-R-R
    Heat map statistics
    Min 0.32 | Avg 0.49 | Max 0.94
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