#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 61-6
1 HL_3R4F_0053R4F0.43390Pseudoknot geometryApRNAU52G53G54U55U56G57ncWW
2 HL_1U6B_0021U6B0.38220Pseudoknot geometryB197-MERC70G71C72C73C74G75cWW
3 HL_5U30_0025U300.40311Pseudoknot geometryBsgRNAU43U45C46C47A48G49cWW
4 HL_6UFM_0056UFM0.23460Pseudoknot geometryBRNA (98-MER)G50G51A52A53A54C55cWW
5 HL_4V9F_0674V9F0.19390Ribsomal LSU H950 LSU rRNAC2737G2738A2739G2740A2741G2742cWW
6 HL_8C3A_0678C3A0.19580Ribsomal LSU H951 LSU rRNAU3040G3041A3042U3043C3044A3045cWW
7 HL_5TBW_0665TBW0.20960Ribsomal LSU H951 LSU rRNAU3068G3069A3070U3071C3072A3073cWW
8 HL_7A0S_0647A0S0.00000Ribsomal LSU H95X LSU rRNAU2680A2681C2682C2683A2684A2685cWW
9 HL_5J7L_1985J7L0.09560Ribsomal LSU H95DA LSU rRNAU2701G2702C2703C2704A2705A2706cWW
10 HL_4WF9_0614WF90.14300Ribsomal LSU H95X LSU rRNAU2728G2729C2730C2731A2732A2733cWW
11 HL_4PQV_0024PQV0.40431Pseudoknot geometryAFlavivirus 3' UTR stem loop IVC28G29C30C31G32G34cWW
12 HL_3V7E_0013V7E0.52001Pseudoknot geometryC SAM-I riboswitchG23C25U26G27G28C29cWW
13 HL_6MWN_0046MWN0.39231Pseudoknot geometryB IRESG650U652G653G654A655C656cWW
14 HL_5FJC_0015FJC0.42331Pseudoknot geometryA SAM-I riboswitchG23C25U26G27G28C29cWW
15 HL_4AOB_0014AOB0.42731Pseudoknot geometryA SAM-I riboswitchG23C25U26G27G28C29cWW
16 HL_4KQY_0014KQY0.37811Pseudoknot geometryA SAM-I riboswitchG23C25U26G27G28C29cWW
17 HL_6VMY_0036VMY0.45321Pseudoknot geometryACobalamin riboswitchG268C270C271C272G273C274cWW
18 HL_7YSE_0027YSE0.70931Pseudoknot geometryE tRNAU32G34C35C36A37A38cWW
19 HL_6UFM_0046UFM0.83262Pseudoknot geometryBRNA (98-MER)G13A16U17C18A19C20cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GACUGGC4
UGAUCA2
UGCCAA2
UGGUUG1
CGCCCG1
UUUCCAG1
GGAAAC1
CGAGAG1
UACCAA1
CGCCGAG1
GCUGGAC1
GUCCCGC1
UUGCCAA1
GCCAUCAC1
Non-Watson-Crick part of the motif
SequenceCounts
ACUGG4
GAUC2
GCCA2
GGUU1
GCCC1
UUCCA1
GAAA1
GAGA1
ACCA1
GCCGA1
CUGGA1
UCCCG1
UGCCA1
CCAUCA1

Release history

Release3.88
Date2024-09-11
StatusNew id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Pseudoknot geometry (13)
  • Ribsomal LSU H95 (6)
  • Basepair signature
    cWW-F-F-F-F
    Heat map statistics
    Min 0.08 | Avg 0.44 | Max 0.97
    Help

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