Motif HL_77235.1 Version HL_77235.1 of this group appears in releases 1.0 to 1.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1QRS_002 | 1QRS | 0.5422 | 2 | tRNA anticodon loop (H) | B | tRNA | A | 31 | U | 32 | U | 33 | U | 35 | A | 37 | U | 38 | U | 39 | cWW | ntSH | |
| 2 | HL_1S72_032 | 1S72 | 0.0000 | 2 | Anticodon loop related (H) | 0 | LSU rRNA | A | 1274 | C | 1275 | U | 1276 | A | 1278 | A | 1280 | C | 1281 | U | 1282 | cWW | cWB | ntSH |
| 3 | HL_4A1B_047 | 4A1B | 0.4771 | 1 | 1 | 26S RRNA | A | 2214 | C | 2215 | G | 2216 | A | 2218 | A | 2219 | U | 2220 | U | 2221 | cWW | cWW | ||
| 4 | HL_1S72_049 | 1S72 | 0.6017 | 1 | GNRA related (H) | 0 | LSU rRNA | C | 1916 | G | 1917 | U | 1918 | C | 1920 | A | 1921 | A | 1922 | G | 1923 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUCUGAUU | 1 |
| ACUCAUACU | 1 |
| ACGCAAUU | 1 |
| CGUACAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCUGAU | 1 |
| CUCAUAC | 1 |
| CGCAAU | 1 |
| GUACAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_77235.1 | Only in the parent motif |
|---|---|---|---|
| HL_53664.1 Compare | HL_1QRS_002, HL_1S72_032 | HL_4A1B_047, HL_1S72_049 | HL_1S72_043 |
| HL_46981.1 Compare | HL_4A1B_047 | HL_1S72_049, HL_1QRS_002, HL_1S72_032 | HL_2D6F_005 |
| HL_01926.1 Compare | HL_1S72_049 | HL_4A1B_047, HL_1QRS_002, HL_1S72_032 | HL_2ZJR_048, HL_2QBG_051, HL_1S72_051, HL_3V2F_047, HL_3U5H_050, HL_4A1B_049 |
Children motifs
| Child motif | Common motif instances | Only in HL_77235.1 | Only in the child motif |
|---|---|---|---|
| HL_77235.2 Compare | HL_4A1B_047, HL_1S72_049, HL_1QRS_002, HL_1S72_032 | HL_4JXZ_002 |
- Annotations
-
- tRNA anticodon loop (H) (1)
- Anticodon loop related (H) (1)
- GNRA related (H) (1)
- (1)
- Basepair signature
- cWW-R-tSH-R
- Heat map statistics
- Min 0.48 | Avg 0.46 | Max 0.74
Coloring options: