Motif HL_02733.3 Version HL_02733.3 of this group appears in releases 3.12 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_185 | 5TBW | 0.2785 | 0 | AS | 5S rRNA | C | 36 | G | 37 | U | 38 | C | 39 | C | 40 | G | 41 | cWW |
| 2 | HL_1MJI_002 | 1MJI | 0.0887 | 1 | D | 5S rRNA fragment | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 3 | HL_5J7L_203 | 5J7L | 0.0753 | 1 | DB | 5S rRNA | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 4 | HL_5FDV_069 | 5FDV | 0.0000 | 1 | 1B | 5S rRNA | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 5 | HL_4V9F_071 | 4V9F | 0.0913 | 1 | 9 | 5S rRNA | C | 37 | A | 38 | U | 39 | C | 41 | C | 42 | G | 43 | cWW |
| 6 | HL_4IOA_069 | 4IOA | 0.1477 | 1 | Y | 5S rRNA | C | 40 | A | 41 | U | 42 | C | 44 | C | 45 | G | 46 | cWW |
| 7 | HL_4WF9_066 | 4WF9 | 0.2415 | 1 | Y | 5S rRNA | C | 36 | A | 37 | U | 38 | C | 40 | C | 41 | G | 42 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGCCG | 4 |
| CGUCCG | 1 |
| CAUUCCG | 1 |
| CAUCCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGCC | 4 |
| GUCC | 1 |
| AUUCC | 1 |
| AUCCC | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.08 | Avg 0.17 | Max 0.34
Coloring options: