Motif HL_02887.1 Version HL_02887.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-6 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7OSM_117 | 7OSM | 0.8761 | 0 | ASIT | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 59 | U | 60 | C | 61 | C | 62 | cWW | cWW | ||
| 2 | HL_5J7L_028 | 5J7L | 0.0000 | 0 | T-loop with 3 stacked bulged bases | AA | SSU rRNA | C | 1314 | U | 1315 | G | 1316 | C | 1317 | A | 1318 | A | 1319 | C | 1320 | U | 1321 | C | 1322 | G | 1323 | cWW | tWH | |
| 3 | HL_4LFB_029 | 4LFB | 0.0808 | 0 | T-loop with 3 stacked bulged bases | A | SSU rRNA | C | 1314 | U | 1315 | G | 1316 | C | 1317 | A | 1318 | A | 1319 | C | 1320 | C | 1321 | C | 1322 | G | 1323 | cWW | tWH | |
| 4 | HL_6CZR_100 | 6CZR | 0.1868 | 0 | T-loop with 3 stacked bulged bases | 1a | SSU rRNA | C | 1296 | U | 1297 | G | 1298 | C | 1299 | A | 1300 | A | 1301 | C | 1302 | C | 1303 | C | 1304 | G | 1305 | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGCAACCCG | 2 |
| GUUCGAUUCC | 1 |
| CUGCAACUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGCAACCC | 2 |
| UUCGAUUC | 1 |
| UGCAACUC | 1 |
- Annotations
-
- T-loop with 3 stacked bulged bases (3)
- (1)
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.39 | Max 0.89
Coloring options: