Motif HL_04171.2 Version HL_04171.2 of this group appears in releases 3.3 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-7 | 4-8 | 5-7 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3IVN_001 | 3IVN | 0.1920 | 1 | A | Purine riboswitch | A | 21 | U | 22 | G | 23 | A | 24 | U | 25 | A | 26 | G | 28 | G | 29 | U | 30 | U | 31 | cWW | cwW | ncSs | |||
| 2 | HL_1Y26_001 | 1Y26 | 0.1422 | 1 | X | Purine riboswitch | A | 30 | U | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | U | 40 | cWW | cwW | ncsS | ncSs | ||
| 3 | HL_4LX6_001 | 4LX6 | 0.1205 | 1 | A | Purine riboswitch | A | 30 | U | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | U | 40 | cWW | cwW | ncSs | |||
| 4 | HL_3LA5_001 | 3LA5 | 0.0723 | 1 | A | Purine riboswitch | A | 30 | U | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | U | 40 | cWW | cwW | ncSs | |||
| 5 | HL_5SWD_004 | 5SWD | 0.0000 | 1 | B | Purine riboswitch | A | 30 | U | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | U | 40 | cWW | cwW | ncSs | |||
| 6 | HL_4ATO_003 | 4ATO | 0.7824 | 1 | G | ToxI antitoxin | U | 15||||3_445 | U | 16||||3_445 | A | 17||||3_445 | C | 18||||3_445 | C | 19||||3_445 | G | 20||||3_445 | A | 22||||3_445 | G | 23||||3_445 | U | 24||||3_445 | A | 25||||3_445 | cWW | cwW | cSH | |||
| 7 | HL_4ATO_001 | 4ATO | 0.7824 | 1 | G | ToxI antitoxin | U | 15 | U | 16 | A | 17 | C | 18 | C | 19 | G | 20 | A | 22 | G | 23 | U | 24 | A | 25 | cWW | cwW | cSH | |||
| 8 | HL_4ATO_002 | 4ATO | 0.7824 | 1 | G | ToxI antitoxin | U | 15||||2_455 | U | 16||||2_455 | A | 17||||2_455 | C | 18||||2_455 | C | 19||||2_455 | G | 20||||2_455 | A | 22||||2_455 | G | 23||||2_455 | U | 24||||2_455 | A | 25||||2_455 | cWW | cwW | cSH | |||
| 9 | HL_2D6F_004 | 2D6F | 0.8409 | 2 | F | tRNA | G | 912 | U | 913 | A | 914 | G | 915 | U | 916 | G | 917 | A | 920 | A | 921 | U | 922 | C | 923 | cWW | ncwW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGAUAUGGUU | 5 |
| UUACCGUAGUA | 3 |
| GUAGUGGUAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAUAUGGU | 5 |
| UACCGUAGU | 3 |
| UAGUGGUAAU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Basepair signature
- cWW-cWW-R-cSS-cSS-R
- Heat map statistics
- Min 0.06 | Avg 0.49 | Max 0.85
Coloring options: