Motif HL_04171.3 Version HL_04171.3 of this group appears in releases 3.54 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-7 | 4-8 | 5-7 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7KVT_001 | 7KVT | 0.3840 | 1 | B | Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions | A | 23 | U | 24 | A | 25 | A | 26 | U | 27 | A | 28 | G | 30 | G | 31 | U | 32 | U | 33 | cWW | cwW | |||||
| 2 | HL_3IVN_001 | 3IVN | 0.1920 | 1 | A | Purine riboswitch | A | 21 | U | 22 | G | 23 | A | 24 | U | 25 | A | 26 | G | 28 | G | 29 | U | 30 | U | 31 | cWW | cwW | ncSs | ||||
| 3 | HL_1Y26_001 | 1Y26 | 0.1422 | 1 | X | Purine riboswitch | A | 30 | U | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | U | 40 | cWW | cwW | ncsS | ncSs | |||
| 4 | HL_4LX6_001 | 4LX6 | 0.1205 | 1 | A | Purine riboswitch | A | 30 | U | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | U | 40 | cWW | cwW | ncSs | ||||
| 5 | HL_3LA5_001 | 3LA5 | 0.0723 | 1 | A | Purine riboswitch | A | 30 | U | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | U | 40 | cWW | cwW | ncSs | ||||
| 6 | HL_5SWD_004 | 5SWD | 0.0000 | 1 | B | Purine riboswitch | A | 30 | U | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | U | 40 | cWW | cwW | ncSs | ||||
| 7 | HL_4ATO_003 | 4ATO | 0.7824 | 1 | G | ToxI antitoxin | U | 15||||3_445 | U | 16||||3_445 | A | 17||||3_445 | C | 18||||3_445 | C | 19||||3_445 | G | 20||||3_445 | A | 22||||3_445 | G | 23||||3_445 | U | 24||||3_445 | A | 25||||3_445 | cWW | cwW | cSH | ||||
| 8 | HL_4ATO_001 | 4ATO | 0.7824 | 1 | G | ToxI antitoxin | U | 15 | U | 16 | A | 17 | C | 18 | C | 19 | G | 20 | A | 22 | G | 23 | U | 24 | A | 25 | cWW | cwW | cSH | ||||
| 9 | HL_4ATO_002 | 4ATO | 0.7824 | 1 | G | ToxI antitoxin | U | 15||||2_455 | U | 16||||2_455 | A | 17||||2_455 | C | 18||||2_455 | C | 19||||2_455 | G | 20||||2_455 | A | 22||||2_455 | G | 23||||2_455 | U | 24||||2_455 | A | 25||||2_455 | cWW | cwW | cSH | ||||
| 10 | HL_2D6F_004 | 2D6F | 0.8409 | 2 | F | tRNA | G | 912 | U | 913 | A | 914 | G | 915 | U | 916 | G | 917 | A | 920 | A | 921 | U | 922 | C | 923 | cWW | ncwW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGAUAUGGUU | 5 |
| UUACCGUAGUA | 3 |
| AUAAUAUGGUU | 1 |
| GUAGUGGUAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAUAUGGU | 5 |
| UACCGUAGU | 3 |
| UAAUAUGGU | 1 |
| UAGUGGUAAU | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWW-R-cSS-cSS-R
- Heat map statistics
- Min 0.06 | Avg 0.50 | Max 0.87
Coloring options: