Motif HL_04259.2 Version HL_04259.2 of this group appears in releases 3.95 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 3-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3R9X_002 | 3R9X | 0.4902 | 0 | GNRA related | C | RNA301 | G | 1514 | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | C | 1521 | ncWW | ncWW | ||
| 2 | HL_8KAL_001 | 8KAL | 0.3718 | 0 | GNRA with extra cWW | A | RNA (98-MER) | U | 31 | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | A | 38 | ncWW | |||
| 3 | HL_4WF9_053 | 4WF9 | 0.0000 | 0 | GNRA with extra cWW | X | LSU rRNA | C | 2382 | C | 2383 | U | 2384 | A | 2385 | C | 2386 | A | 2387 | A | 2388 | G | 2389 | cWW | ncWW | ||
| 4 | HL_9DFE_055 | 9DFE | 0.1328 | 0 | GNRA with extra cWW (H) | 1A | LSU rRNA | C | 2355 | C | 2356 | U | 2357 | G | 2358 | C | 2359 | A | 2360 | A | 2361 | G | 2362 | cWW | ncWW | ||
| 5 | HL_7A0S_056 | 7A0S | 0.2708 | 0 | GNRA with extra cWW | X | LSU rRNA | C | 2334 | U | 2335 | G | 2336 | A | 2337 | C | 2338 | A | 2339 | C | 2340 | G | 2341 | cWW | ntSH | ||
| 6 | HL_7QR8_003 | 7QR8 | 0.3907 | 0 | GNRA with extra tWH | A | PTPRC sgRNA | U | 71 | U | 72 | G | 73 | A | 74 | A | 75 | A | 76 | A | 77 | A | 78 | cWW | ntSH | ||
| 7 | HL_3RG5_006 | 3RG5 | 0.4351 | 1 | tRNA anticodon loop | B | Selenocysteine transfer RNA | G | 31 | C | 32 | U | 33 | C | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | cWW | ||
| 8 | HL_4V87_253 | 4V87 | 0.5724 | 0 | GNRA with near cWW | BB | TRNA-LEU | C | 48 | C | 49 | A | 50 | A | 51 | U | 52 | A | 53 | G | 54 | G | 55 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGGAACC | 1 |
| UAGAAAUA | 1 |
| CCUACAAG | 1 |
| CCUGCAAG | 1 |
| CUGACACG | 1 |
| UUGAAAAA | 1 |
| GCUUCAAAC | 1 |
| CCAAUAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGGAAC | 1 |
| AGAAAU | 1 |
| CUACAA | 1 |
| CUGCAA | 1 |
| UGACAC | 1 |
| UGAAAA | 1 |
| CUUCAAA | 1 |
| CAAUAG | 1 |
Release history
| Release | 3.95 |
|---|---|
| Date | 2025-03-26 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA with extra cWW (3)
- GNRA related (1)
- tRNA anticodon loop (1)
- GNRA with near cWW (1)
- GNRA with extra tWH (1)
- GNRA with extra cWW (H) (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.13 | Avg 0.39 | Max 0.79
Coloring options: