Motif HL_04325.1 Version HL_04325.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2XD0_001 | 2XD0 | 0.0000 | 1 | V | TOXI | U | 4 | G | 5 | U | 7 | U | 8 | U | 9 | G | 10 | C | 11 | U | 12 | A | 13 | ncWW | ncSH |
| 2 | HL_3O58_075 | 3O58 | 0.4274 | 1 | 3 | 5.8S rRNA | C | 47 | A | 48 | C | 50 | G | 51 | A | 52 | A | 53 | A | 54 | U | 55 | G | 56 | cWW | |
| 3 | HL_2QBG_003 | 2QBG | 0.6123 | 1 | B | LSU rRNA | U | 59 | G | 60 | U | 62 | A | 63 | A | 64 | U | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUUUGCUA | 1 |
| CAGCGAAAUG | 1 |
| UGCUAAUCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUUUGCU | 1 |
| AGCGAAAU | 1 |
| GCUAAUCU | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_04325.1 | Only in the child motif |
|---|---|---|---|
| HL_11509.1 Compare | HL_2XD0_001, HL_2QBG_003 | HL_3O58_075 | HL_2ZJR_001, HL_4A1C_001, HL_1S72_001, HL_3V2F_001 |
Coloring options: