Motif HL_04434.1 Version HL_04434.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_6U8D_001 | 6U8D | 0.9359 | 2 | A | JIIIabc RNA (68-MER) | G | 161 | A | 162 | G | 163 | C | 166 | cWW |
2 | HL_8UO6_006 | 8UO6 | 0.3329 | 2 | B | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | C | 49 | A | 50 | A | 51 | G | 54 | cWW |
3 | HL_8C3A_221 | 8C3A | 0.0000 | 2 | CM | SSU rRNA | C | 1344 | A | 1345 | U | 1346 | G | 1349 | cWW |
4 | HL_4V88_187 | 4V88 | 0.2280 | 8 | A6 | SSU rRNA | C | 70 | A | 71 | A | 72 | G | 81 | cWW |
5 | HL_8C3A_193 | 8C3A | 0.4912 | 8 | CM | SSU rRNA | C | 70 | A | 71 | A | 72 | G | 81 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAAUUUAUACAG | 2 |
GAGUAC | 1 |
CAAUGG | 1 |
CAUUUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAUUUAUACA | 2 |
AGUA | 1 |
AAUG | 1 |
AUUU | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.Coloring options: