#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 41-4
1 HL_6U8D_0016U8D0.93592AJIIIabc RNA (68-MER)G161A162G163C166cWW
2 HL_8UO6_0068UO60.33292BHIV-1 Rev Response Element Stem-Loop II with tRNA scaffoldC49A50A51G54cWW
3 HL_8C3A_2218C3A0.00002CM SSU rRNAC1344A1345U1346G1349cWW
4 HL_4V88_1874V880.22808A6 SSU rRNAC70A71A72G81cWW
5 HL_8C3A_1938C3A0.49128CM SSU rRNAC70A71A72G81cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAUUUAUACAG2
GAGUAC1
CAAUGG1
CAUUUG1
Non-Watson-Crick part of the motif
SequenceCounts
AAUUUAUACA2
AGUA1
AAUG1
AUUU1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (5)
  • Basepair signature
    cWW-F-F
    Heat map statistics
    Min 0.23 | Avg 0.45 | Max 0.94
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