Motif HL_05304.3 Version HL_05304.3 of this group appears in releases 3.95 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-4 | 3-11 | 4-10 | 4-11 | 5-8 | 5-10 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8CRE_204 | 8CRE | 0.0937 | 0 | CM | SSU rRNA | A | 518 | A | 519 | U | 520 | G | 521 | U | 522 | A | 523 | A | 524 | A | 525 | U | 526 | A | 527 | C | 528 | C | 529 | U | 530 | cWW | cWWa | tSH | |||||
| 2 | HL_8P9A_203 | 8P9A | 0.0000 | 0 | sR | SSU rRNA | A | 520 | A | 521 | U | 522 | G | 523 | U | 524 | A | 525 | A | 526 | A | 527 | U | 528 | A | 529 | C | 530 | C | 531 | U | 532 | cWW | ncWWa | ntSH | |||||
| 3 | HL_4WFL_001 | 4WFL | 0.2729 | 0 | A | LSRP RNA | G | 19 | A | 20 | G | 21 | G | 22 | U | 23 | A | 24 | G | 25 | C | 26 | G | 27 | G | 28 | U | 29 | G | 30 | C | 31 | cWW | cWW | tSH | ntSHa | ||||
| 4 | HL_7A0S_072 | 7A0S | 0.8086 | 2 | X | LSU rRNA | G | 1503 | G | 1504 | U | 1505 | A | 1507 | G | 1508 | A | 1509 | A | 1510 | A | 1511 | A | 1512 | C | 1514 | U | 1515 | A | 1516 | C | 1517 | cWW | cWW | ncWH | ncWW | ncWW | |||
| 5 | HL_5E81_248 | 5E81 | 0.9267 | 0 | 3L | tRNA | A | 51 | G | 52 | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | A | 59 | U | 60 | C | 61 | C | 62 | U | 63 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUGUAAAUACCU | 2 |
| GAGGUAGCGGUGC | 1 |
| GGUCAGAAAAUCUAC | 1 |
| AGGUUCGAAUCCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGUAAAUACC | 2 |
| AGGUAGCGGUG | 1 |
| GUCAGAAAAUCUA | 1 |
| GGUUCGAAUCC | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.53 | Max 0.93
Coloring options: