Motif HL_08002.3 Version HL_08002.3 of this group appears in releases 3.10 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6	1-6	2-3
1	HL_6DN2_004	6DN2	0.1414	2	T-loop with unstacked turn	Y	RNA (56-MER)	G	88	U	89	A	92	G	93	U	94	C	95	cWW	tWH
2	HL_3F2X_005	3F2X	0.1544	2	T-loop with unstacked turn	X	FMN riboswitch (RFN element)	G	88	U	89	A	92	G	93	U	94	C	95	cWW	tWH
3	HL_5C45_004	5C45	0.1315	2	T-loop with unstacked turn	Y	FMN Riboswitch	G	88	U	89	A	92	G	93	U	94	C	95	cWW	tWH
4	HL_5C45_002	5C45	0.0000	2	T-loop with unstacked turn	X	FMN Riboswitch	G	36	U	37	A	40	G	41	U	42	C	43	cWW	tWH
5	HL_3F2X_002	3F2X	0.0804	2	T-loop with unstacked turn	X	FMN riboswitch (RFN element)	G	36	U	37	A	40	G	41	U	42	C	43	cWW	tWH
6	HL_6DN2_002	6DN2	0.1052	2	T-loop with unstacked turn	X	RNA RIBOSWITCH	G	36	U	37	A	40	G	41	U	42	C	43	cWW	tWH
7	HL_4FRG_003	4FRG	0.1463	3	T-loop with unstacked turn	B	Cobalamin riboswitch	G	58	U	59	A	63	C	64	U	65	C	66	cWW	tWH
8	HL_4FRN_007	4FRN	0.1616	3	T-loop with unstacked turn	B	Cobalamin riboswitch	G	56	U	57	A	61	C	62	U	63	C	64	cWW	tWH
9	HL_4WF9_012	4WF9	0.2942	3	T-loop with unstacked turn	X	LSU rRNA	G	370	U	371	A	375	A	376	U	377	C	378	cWW	ntWH
10	HL_4V8P_090	4V8P	0.2815	3	T-loop with unstacked turn	D1	LSU rRNA	G	216	U	217	A	221	A	222	C	223	C	224	cWW	tWH
11	HL_4V9F_012	4V9F	0.2716	3	T-loop with unstacked turn	0	LSU rRNA	G	334	U	335	A	339	A	340	C	341	C	342	cWW	tWH
12	HL_4Y4O_114	4Y4O	0.2584	3	T-loop with unstacked turn	2A	LSU rRNA	G	327	U	328	A	332	G	333	C	334	C	335	cWW	tWH
13	HL_5J7L_144	5J7L	0.2283	3	T-loop with unstacked turn	DA	LSU rRNA	G	327	U	328	A	332	G	333	C	334	C	335	cWW	tWH
14	HL_5TBW_007	5TBW	0.2869	3	T-loop with unstacked turn	1	LSU rRNA	G	216	U	217	A	221	A	222	U	223	C	224	cWW	tWH
15	HL_4IOA_011	4IOA	1.1977	3	T-loop with unstacked turn	X	LSU rRNA	G	338	U	339	A	343	G	344	U	345	C	346	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUAGAGUC	3
GUAUAGUC	3
GUUAUACUC	2
GUGACAACC	2
GUAAUAAUC	1
GUGAAAGCC	1
GUGACAGCC	1
GUGAGAAUC	1
GUGAGAGUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAGAGU	3
UAUAGU	3
UUAUACU	2
UGACAAC	2
UAAUAAU	1
UGAAAGC	1
UGACAGC	1
UGAGAAU	1
UGAGAGU	1

Release history

Release	3.10	3.11
Date	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: T-loop with unstacked turn (15)
Basepair signature: cWW-R-R-tWH
Heat map statistics: Min 0.05 | Avg 0.34 | Max 1.21

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