Motif HL_89482.2 Version HL_89482.2 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1FJG_014 | 1FJG | 0.6543 | 0 | A | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | ntWH | |
| 2 | HL_2AW7_014 | 2AW7 | 0.6835 | 0 | A | 16S ribosomal RNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | ntWH | |
| 3 | HL_2GDI_003 | 2GDI | 0.6727 | 0 | Y | TPP riboswitch | C | 27 | U | 28 | G | 29 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | ntWW | |
| 4 | HL_2GDI_001 | 2GDI | 0.6578 | 0 | X | TPP riboswitch | C | 27 | U | 28 | G | 29 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | tWW | |
| 5 | HL_3LA5_002 | 3LA5 | 0.2006 | 1 | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | ||
| 6 | HL_4LX6_002 | 4LX6 | 0.1230 | 1 | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | ||
| 7 | HL_1Y26_002 | 1Y26 | 0.0000 | 1 | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 8 | HL_3FO4_002 | 3FO4 | 0.0976 | 1 | A | Guanine riboswitch C74U mutant | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 9 | HL_3AL0_002 | 3AL0 | 0.4709 | 2 | E | tRNA | A | 31 | C | 32 | C | 34 | U | 35 | G | 36 | A | 38 | U | 39 | cWW | cWW | |
| 10 | HL_3QSY_002 | 3QSY | 0.7156 | 2 | D | tRNA | G | 31 | C | 32 | C | 34 | A | 35 | U | 36 | A | 38 | C | 39 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUCAAC | 2 |
| CUGCGUG | 2 |
| GCUUCCAC | 2 |
| GUUUCUAC | 2 |
| ACUCUGGAU | 1 |
| GCUCAUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCAA | 2 |
| UGCGU | 2 |
| CUUCCA | 2 |
| UUUCUA | 2 |
| CUCUGGA | 1 |
| CUCAUAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_89482.2 | Only in the parent motif |
|---|---|---|---|
| HL_89482.1 Compare | HL_2GDI_001, HL_2GDI_003, HL_1FJG_014, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 | HL_4LX6_002, HL_3QSY_002 | HL_3RKF_002, HL_1FJG_002 |
| HL_84967.1 Compare | HL_3QSY_002 | HL_2GDI_001, HL_2GDI_003, HL_1FJG_014, HL_4LX6_002, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 | HL_4BPP_035 |
Children motifs
| Child motif | Common motif instances | Only in HL_89482.2 | Only in the child motif |
|---|---|---|---|
| HL_71179.1 Compare | HL_2GDI_001, HL_2GDI_003, HL_1FJG_014, HL_4LX6_002, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 | HL_3QSY_002 | HL_1VW3_053, HL_4QK8_002, HL_4CUV_064, HL_4QCN_060, HL_4TZX_002, HL_4A1B_063, HL_2QBG_064, HL_1VX6_063, HL_1FJG_002, HL_3U5H_064, HL_4IOA_061 |
| HL_08494.1 Compare | HL_3QSY_002 | HL_2GDI_001, HL_2GDI_003, HL_1FJG_014, HL_4LX6_002, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 | HL_1VX6_031 |
- Annotations
-
- (10)
- Basepair signature
- cWW-tWH-R-R-R
- Heat map statistics
- Min 0.06 | Avg 0.52 | Max 0.89
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