Motif HL_08678.1 Version HL_08678.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 2-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_028 | 5TBW | 0.5489 | 2 | 1 | LSU rRNA | G | 1266 | U | 1267 | G | 1268 | U | 1269 | C | 1272 | A | 1273 | A | 1274 | C | 1275 | ncWW | ncWW | ||
| 2 | HL_2DER_005 | 2DER | 0.4066 | 1 | D | tRNA | C | 31 | C | 32 | U | 33 | U | 35 | C | 36 | A | 37 | C | 38 | G | 39 | cWW | |||
| 3 | HL_4V9F_069 | 4V9F | 0.2033 | 1 | 0 | LSU rRNA | G | 2836 | A | 2838 | C | 2839 | A | 2840 | A | 2841 | G | 2842 | A | 2843 | C | 2844 | cWW | cSW | ||
| 4 | HL_5TBW_070 | 5TBW | 0.1727 | 1 | 1 | LSU rRNA | G | 3303 | A | 3305 | U | 3306 | A | 3307 | C | 3308 | G | 3309 | A | 3310 | C | 3311 | cWW | cSW | ||
| 5 | HL_5J7L_201 | 5J7L | 0.0000 | 1 | DA | LSU rRNA | G | 2819 | A | 2821 | G | 2822 | A | 2823 | C | 2824 | G | 2825 | A | 2826 | C | 2827 | cWW | cSW | ||
| 6 | HL_7RQB_068 | 7RQB | 0.1356 | 1 | 1A | LSU rRNA | G | 2819 | A | 2821 | G | 2822 | A | 2823 | C | 2824 | C | 2825 | A | 2826 | C | 2827 | cWW | cSW | ||
| 7 | HL_7A0S_067 | 7A0S | 0.1470 | 1 | X | LSU rRNA | G | 2794 | A | 2796 | G | 2797 | A | 2798 | C | 2799 | C | 2800 | A | 2801 | C | 2802 | cWW | cSW | ||
| 8 | HL_4WF9_064 | 4WF9 | 0.1893 | 1 | X | LSU rRNA | A | 2839 | A | 2841 | G | 2842 | A | 2843 | U | 2844 | G | 2845 | A | 2846 | U | 2847 | cWW | cSW | ||
| 9 | HL_4V88_213 | 4V88 | 0.6273 | 2 | A6 | SSU rRNA | A | 1238 | U | 1239 | U | 1240 | G | 1241 | A | 1242 | A | 1244 | C | 1246 | U | 1247 | cWW | ntSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGACCAC | 2 |
| GUGUAACAAC | 1 |
| CCUUUCACG | 1 |
| GUACAAGAC | 1 |
| GUAUACGAC | 1 |
| GAAGACGAC | 1 |
| AAAGAUGAU | 1 |
| AUUGAGAGCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGACCA | 2 |
| UGUAACAA | 1 |
| CUUUCAC | 1 |
| UACAAGA | 1 |
| UAUACGA | 1 |
| AAGACGA | 1 |
| AAGAUGA | 1 |
| UUGAGAGC | 1 |
- Annotations
- Basepair signature
- cWW-cSW-F-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.38 | Max 0.99
Coloring options: