Motif HL_09122.1 Version HL_09122.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | 3-7 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6MJ0_001 | 6MJ0 | 0.6818 | 0 | A | tRNA-like 3' UTR element | U | 12 | C | 13 | U | 14 | U | 15 | U | 16 | A | 17 | A | 18 | A | 19 | A | 20 | cWW | cSW | ncSH | ncSH | |
| 2 | HL_9UW0_003 | 9UW0 | 0.3568 | 0 | X | RNA (65-MER) | A | 48 | C | 49 | C | 50 | A | 51 | C | 52 | A | 53 | A | 54 | A | 55 | U | 56 | cWW | ncSW | |||
| 3 | HL_8KEB_003 | 8KEB | 0.2287 | 0 | A | RNA (72-MER) | A | 47 | C | 48 | C | 49 | A | 50 | C | 51 | A | 52 | A | 53 | A | 54 | U | 55 | cWW | cSW | ncSH | ||
| 4 | HL_9LKV_003 | 9LKV | 0.2355 | 0 | X | RNA (73-MER) | A | 48 | C | 49 | C | 50 | A | 51 | C | 52 | A | 53 | A | 54 | A | 55 | U | 56 | cWW | cSW | cSH | ||
| 5 | HL_3RKF_009 | 3RKF | 0.2026 | 0 | C | Guanine riboswitch | A | 59 | C | 60 | U | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | ncSW | cSH | ||
| 6 | HL_5KPY_002 | 5KPY | 0.1923 | 0 | A | 5-hydroxytryptophan RNA aptamer | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | ||
| 7 | HL_7KVT_002 | 7KVT | 0.1770 | 0 | B | Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions | G | 55 | C | 56 | C | 57 | U | 58 | U | 59 | A | 60 | A | 61 | A | 62 | C | 63 | cWW | ntSW | cSH | ||
| 8 | HL_1Y27_003 | 1Y27 | 0.1063 | 0 | X | Purine riboswitch | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | ||
| 9 | HL_4FEN_003 | 4FEN | 0.0835 | 0 | B | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | ||
| 10 | HL_3LA5_003 | 3LA5 | 0.0807 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH | ||
| 11 | HL_5SWD_006 | 5SWD | 0.0000 | 0 | B | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH | ||
| 12 | HL_4LX6_003 | 4LX6 | 0.0908 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | ncSH | ||
| 13 | HL_4XNR_003 | 4XNR | 0.1351 | 0 | X | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH | ||
| 14 | HL_1Y26_003 | 1Y26 | 0.1491 | 0 | X | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | |||
| 15 | HL_9IWF_006 | 9IWF | 0.2542 | 0 | B | Purine riboswitch | A | 46 | C | 47 | C | 48 | C | 49 | U | 50 | A | 51 | A | 52 | A | 53 | U | 54 | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCUUAAAC | 6 |
| ACCACAAAU | 3 |
| ACCGUAAAU | 3 |
| UCUUUAAAA | 1 |
| ACUGUAAAU | 1 |
| ACCCUAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUUAAA | 6 |
| CCACAAA | 3 |
| CCGUAAA | 3 |
| CUUUAAA | 1 |
| CUGUAAA | 1 |
| CCCUAAA | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (15)
- Basepair signature
- cWW-F-F-cSW-cSH-F
- Heat map statistics
- Min 0.07 | Avg 0.26 | Max 0.71
Coloring options: