Motif HL_09967.2 Version HL_09967.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-5 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6UFM_006 | 6UFM | 0.7174 | 0 | Pseudoknot | B | RNA (98-MER) | G | 80 | G | 81 | U | 82 | G | 83 | A | 84 | G | 85 | C | 86 | C | 87 | cWW | ncSH | |||
| 2 | HL_1H3E_002 | 1H3E | 0.2346 | 1 | tRNA anticodon loop | B | tRNA | U | 31 | C | 32 | U | 33 | G | 34 | A | 36 | A | 37 | A | 38 | A | 39 | cWW | ncWB | |||
| 3 | HL_5UD5_002 | 5UD5 | 0.0000 | 1 | tRNA anticodon loop | C | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | ntSH | ||
| 4 | HL_4V9F_032 | 4V9F | 0.2002 | 1 | Anticodon loop related | 0 | LSU rRNA | A | 1274 | C | 1275 | U | 1276 | C | 1277 | A | 1278 | A | 1280 | C | 1281 | U | 1282 | cWW | cWB | ntSH | ||
| 5 | HL_7PMQ_003 | 7PMQ | 0.3554 | 0 | Anticodon loop related | F | RNA (42-MER) | G | 8 | U | 9 | U | 10 | U | 11 | C | 12 | G | 13 | A | 14 | C | 15 | cWW | ||||
| 6 | HL_6UFM_004 | 6UFM | 0.6204 | 0 | Pseudoknot geometry | B | RNA (98-MER) | G | 13 | C | 14 | C | 15 | A | 16 | U | 17 | C | 18 | A | 19 | C | 20 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUGAGCC | 1 |
| UCUGAAAA | 1 |
| ACUCUAAAU | 1 |
| ACUCAUACU | 1 |
| GUUUCGAC | 1 |
| GCCAUCAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGAGC | 1 |
| CUG(PSU)AAA | 1 |
| CUCUAAA | 1 |
| CUCAUAC | 1 |
| UUUCGA | 1 |
| CCAUCA | 1 |
- Annotations
-
- tRNA anticodon loop (2)
- Anticodon loop related (2)
- Pseudoknot geometry (1)
- Pseudoknot (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.20 | Avg 0.44 | Max 0.79
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