Motif HL_09967.2 Version HL_09967.2 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-6	2-7	3-5	3-6
1	HL_6UFM_006	6UFM	0.7174	0	Pseudoknot	B	RNA (98-MER)	G	80	G	81	U	82	G	83	A	84	G	85	C	86	C	87	cWW			ncSH
2	HL_1H3E_002	1H3E	0.2346	1	tRNA anticodon loop	B	tRNA	U	31	C	32	U	33	G	34	A	36	A	37	A	38	A	39	cWW	ncWB
3	HL_5UD5_002	5UD5	0.0000	1	tRNA anticodon loop	C	tRNA	A	31	C	32	U	33	C	34	A	36	A	37	A	38	U	39	cWW		ncWW		ntSH
4	HL_4V9F_032	4V9F	0.2002	1	Anticodon loop related	0	LSU rRNA	A	1274	C	1275	U	1276	C	1277	A	1278	A	1280	C	1281	U	1282	cWW		cWB		ntSH
5	HL_7PMQ_003	7PMQ	0.3554	0	Anticodon loop related	F	RNA (42-MER)	G	8	U	9	U	10	U	11	C	12	G	13	A	14	C	15	cWW
6	HL_6UFM_004	6UFM	0.6204	0	Pseudoknot geometry	B	RNA (98-MER)	G	13	C	14	C	15	A	16	U	17	C	18	A	19	C	20	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUGAGCC	1
UCUGAAAA	1
ACUCUAAAU	1
ACUCAUACU	1
GUUUCGAC	1
GCCAUCAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUGAGC	1
CUG(PSU)AAA	1
CUCUAAA	1
CUCAUAC	1
UUUCGA	1
CCAUCA	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	Updated, 2 parents	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tRNA anticodon loop (2)
Anticodon loop related (2)
Pseudoknot geometry (1)
Pseudoknot (1)
Basepair signature: cWW-F-F-F-F-F-F
Heat map statistics: Min 0.20 | Avg 0.44 | Max 0.79

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Coloring options: Nucleotide numbers

Motif HL_09967.2 Version HL_09967.2 of this group appears in releases 3.91 to 3.94 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_09967.2 Version HL_09967.2 of this group appears in releases 3.91 to 3.94

Download

Csv

Json