Motif HL_10397.1 Version HL_10397.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6N5P_004 | 6N5P | 0.5988 | 1 | A | cyclic di-AMP riboswitch | A | 57 | G | 58 | U | 59 | A | 61 | A | 62 | G | 63 | C | 64 | U | 65 | cWW | ncWW | ||
| 2 | HL_4JXZ_002 | 4JXZ | 0.4603 | 1 | tRNA anticodon loop with synthetase | B | tRNA | U | 931 | U | 932 | U | 933 | U | 934 | U | 935 | A | 937 | U | 938 | A | 939 | cWW | ntSH | |
| 3 | HL_1QTQ_002 | 1QTQ | 0.4227 | 1 | tRNA anticodon loop with synthetase | B | tRNA | A | 931 | U | 932 | U | 933 | C | 934 | U | 935 | A | 937 | U | 938 | U | 939 | cWW | tSH | |
| 4 | HL_6GSK_204 | 6GSK | 0.5544 | 1 | T-loop | 1K | tRNA | G | 53 | 5MU | 54 | PSU | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | ncWW | ntWH | |
| 5 | HL_1J2B_001 | 1J2B | 0.5648 | 1 | C | tRNA(Val) | C | 932 | C | 933 | U | 934 | A | 936 | C | 937 | G | 938 | A | 939 | G | 940 | cWW | cWW | ||
| 6 | HL_8VTW_025 | 8VTW | 0.3713 | 0 | 1A | LSU rRNA | C | 884 | C | 885 | C | 886 | A | 887 | C | 888 | C | 889 | A | 890 | G | 892 | cWW | ncSW | ||
| 7 | HL_8VTW_056 | 8VTW | 0.2863 | 0 | GNRA with extra cWW | 1A | LSU rRNA | C | 2355 | C | 2356 | U | 2357 | G | 2358 | C | 2359 | A | 2360 | A | 2361 | G | 2362 | cWW | ncWW | |
| 8 | HL_4WF9_053 | 4WF9 | 0.2708 | 0 | GNRA with extra cWW | X | LSU rRNA | C | 2382 | C | 2383 | U | 2384 | A | 2385 | C | 2386 | A | 2387 | A | 2388 | G | 2389 | cWW | ncWW | |
| 9 | HL_7A0S_056 | 7A0S | 0.0000 | 0 | GNRA with extra cWW | X | LSU rRNA | C | 2334 | U | 2335 | G | 2336 | A | 2337 | C | 2338 | A | 2339 | C | 2340 | G | 2341 | cWW | ntSH | |
| 10 | HL_7QR8_003 | 7QR8 | 0.3169 | 0 | GNRA with extra cWH | A | tracrRNA | U | 71 | U | 72 | G | 73 | A | 74 | A | 75 | A | 76 | A | 77 | A | 78 | cWW | ntSH | |
| 11 | HL_3RG5_006 | 3RG5 | 0.3233 | 1 | tRNA anticodon loop | B | Selenocysteine transfer RNA | G | 31 | C | 32 | U | 33 | C | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | cWW | |
| 12 | HL_8KAL_001 | 8KAL | 0.4031 | 0 | GNRA with extra cWW | A | tracrRNA | U | 31 | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | A | 38 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUGAAGCU | 1 |
| UUUUUGAUA | 1 |
| AUUCUGAUU | 1 |
| G(5MU)(PSU)CGACUC | 1 |
| CCUUACGAG | 1 |
| CCCACCAG | 1 |
| CCUGCAAG | 1 |
| CCUACAAG | 1 |
| CUGACACG | 1 |
| UUGAAAAA | 1 |
| GCUUCAAAC | 1 |
| UAGAAAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGAAGC | 1 |
| UUUUGAU | 1 |
| UUCUGAU | 1 |
| (5MU)(PSU)CGACU | 1 |
| CUUACGA | 1 |
| CCACCA | 1 |
| CUGCAA | 1 |
| CUACAA | 1 |
| UGACAC | 1 |
| UGAAAA | 1 |
| CUUCAAA | 1 |
| AGAAAU | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA with extra cWW (4)
- (3)
- tRNA anticodon loop with synthetase (2)
- tRNA anticodon loop (1)
- T-loop (1)
- GNRA with extra cWH (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.11 | Avg 0.48 | Max 0.96
Coloring options: