#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 81-82-73-6
1 HL_6N5P_0046N5P0.59881A cyclic di-AMP riboswitchA57G58U59A61A62G63C64U65cWWncWW
2 HL_4JXZ_0024JXZ0.46031BRNA (71-MER)U931U932U933U934U935A937U938A939cWWntSH
3 HL_1QTQ_0021QTQ0.42271B tRNAA931U932U933C934U935A937U938U939cWWtSH
4 HL_6GSK_2046GSK0.554411K tRNAG535MU54PSU55C56G57A58U60C61ncWWntWH
5 HL_1J2B_0011J2B0.56481CtRNA(Val)C932C933U934A936C937G938A939G940cWWcWW
6 HL_8VTW_0258VTW0.371301A LSU rRNAC884C885C886A887C888C889A890G892cWWncSW
7 HL_8VTW_0568VTW0.286301A LSU rRNAC2355C2356U2357G2358C2359A2360A2361G2362cWWncWW
8 HL_4WF9_0534WF90.27080X LSU rRNAC2382C2383U2384A2385C2386A2387A2388G2389cWWncWW
9 HL_7A0S_0567A0S0.00000X LSU rRNAC2334U2335G2336A2337C2338A2339C2340G2341cWWntSH
10 HL_7QR8_0037QR80.31690APTPRC sgRNAU71U72G73A74A75A76A77A78cWWntSH
11 HL_3RG5_0063RG50.32331BSelenocysteine transfer RNAG31C32U33C35A36A37A38C39cWWcWW
12 HL_8KAL_0018KAL0.40310ARNA (98-MER)U31A32G33A34A35A36U37A38ncWW

3D structures

Complete motif including flanking bases
SequenceCounts
AGUGAAGCU1
UUUUUGAUA1
AUUCUGAUU1
GCGACUC1
CCUUACGAG1
CCCACCAG1
CCUGCAAG1
CCUACAAG1
CUGACACG1
UUGAAAAA1
GCUUCAAAC1
UAGAAAUA1
Non-Watson-Crick part of the motif
SequenceCounts
GUGAAGC1
UUUUGAU1
UUCUGAU1
(5MU)(PSU)CGACU1
CUUACGA1
CCACCA1
CUGCAA1
CUACAA1
UGACAC1
UGAAAA1
CUUCAAA1
AGAAAU1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (12)
  • Basepair signature
    cWW-F-F-F-F-F-F
    Heat map statistics
    Min 0.11 | Avg 0.48 | Max 0.96
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