Motif HL_14199.1 Version HL_14199.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_5J7L_192 | 5J7L | 0.1956 | 5 | DA | LSU rRNA | U | 2404 | G | 2405 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH |
2 | HL_8VTW_058 | 8VTW | 0.1762 | 5 | 1A | LSU rRNA | C | 2404 | G | 2405 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH |
3 | HL_4WF9_055 | 4WF9 | 0.1526 | 5 | X | LSU rRNA | C | 2431 | G | 2432 | A | 2438 | A | 2439 | G | 2440 | cWW | tSH |
4 | HL_7A0S_058 | 7A0S | 0.0000 | 5 | X | LSU rRNA | C | 2383 | G | 2384 | A | 2390 | A | 2391 | G | 2392 | cWW | tSH |
5 | HL_7KGA_004 | 7KGA | 0.5087 | 7 | B | Flavivirus DB element | U | 53 | A | 54 | G | 62 | A | 63 | G | 64 | cWW | tSH |
6 | HL_7KGA_002 | 7KGA | 0.5781 | 7 | A | Flavivirus DB element | U | 53 | A | 54 | G | 62 | A | 63 | G | 64 | cWW | tSH |
7 | HL_5J7L_214 | 5J7L | 0.6185 | 2 | DA | LSU rRNA | C | 1727 | C | 1728 | C | 1730 | G | 1731 | G | 1733 | cWW | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGUGUGGAAG | 2 |
UAUCGGUUAGAG | 2 |
UGAAUGGAAG | 1 |
CGCAUGGAAG | 1 |
CCUCGCG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUGUGGAA | 2 |
AUCGGUUAGA | 2 |
GAAUGGAA | 1 |
GCAUGGAA | 1 |
CUCGC | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-tSH-F
- Heat map statistics
- Min 0.13 | Avg 0.37 | Max 0.65
Coloring options: