#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 51-52-4
1 HL_5J7L_1925J7L0.19565DA LSU rRNAU2404G2405A2411A2412G2413cWWtSH
2 HL_8VTW_0588VTW0.176251A LSU rRNAC2404G2405A2411A2412G2413cWWtSH
3 HL_4WF9_0554WF90.15265X LSU rRNAC2431G2432A2438A2439G2440cWWtSH
4 HL_7A0S_0587A0S0.00005X LSU rRNAC2383G2384A2390A2391G2392cWWtSH
5 HL_7KGA_0047KGA0.50877BFlavivirus DB elementU53A54G62A63G64cWWtSH
6 HL_7KGA_0027KGA0.57817AFlavivirus DB elementU53A54G62A63G64cWWtSH
7 HL_5J7L_2145J7L0.61852DA LSU rRNAC1727C1728C1730G1731G1733cWWncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGUGUGGAAG2
UAUCGGUUAGAG2
UGAAUGGAAG1
CGCAUGGAAG1
CCUCGCG1
Non-Watson-Crick part of the motif
SequenceCounts
GUGUGGAA2
AUCGGUUAGA2
GAAUGGAA1
GCAUGGAA1
CUCGC1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (7)
  • Basepair signature
    cWW-tSH-F
    Heat map statistics
    Min 0.13 | Avg 0.37 | Max 0.65
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