Motif HL_16398.1 Version HL_16398.1 of this group appears in releases 3.89 to 3.93
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1EC6_001 | 1EC6 | 0.0000 | 5 | C | 20-MER RNA HAIRPIN | G | 4 | A | 5 | C | 6 | C | 7 | A | 9 | G | 10 | C | 15 | C | 16 | C | 17 | cWW | ncWWa | tSW |
| 2 | HL_3EGZ_001 | 3EGZ | 0.8176 | 4 | B | Tetracycline aptamer and artificial riboswitch | G | 12 | A | 13 | A | 14 | G | 15 | A | 16 | U | 18 | A | 22 | C | 23 | C | 24 | cWW | ncWWa | ntSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACCUAGAUCACCC | 1 |
| GAAGAAUACGACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACCUAGAUCACC | 1 |
| AAGAAUACGAC | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-tSW-F
- Heat map statistics
- Min 0.82 | Avg 0.41 | Max 0.82
Coloring options: