Motif HL_16770.1 Version HL_16770.1 of this group appears in releases 0.3 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_387D_001 | 387D | 0.0000 | 0 | A | RNA Pseudoknot | G | 4 | A | 5 | A | 6 | G | 7 | U | 8 | G | 9 | C | 10 | A | 11 | A | 12 | C | 13 | cWW | tWW | |
| 2 | HL_1F27_001 | 1F27 | 0.9067 | 0 | Pseudoknot geometry | A | RNA (19-mer) | U | 7 | C | 8 | A | 9 | G | 10 | A | 11 | G | 12 | G | 13 | A | 14 | C | 15 | A | 16 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGUGCAAC | 1 |
| UCAGAGGACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGUGCAA | 1 |
| CAGAGGAC | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_16770.1 | Only in the parent motif |
|---|---|---|---|
| HL_29369.2 Compare | HL_1F27_001 | HL_387D_001 | HL_3D0U_002, HL_2QBG_004, HL_3PYO_002, HL_3DIR_002 |
| HL_70011.1 Compare | HL_387D_001 | HL_1F27_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_16770.1 | Only in the child motif |
|---|---|---|---|
| HL_50461.1 Compare | HL_387D_001 | HL_1F27_001 | HL_3B31_001 |
| HL_86889.1 Compare | HL_1F27_001 | HL_387D_001 | HL_2JLT_001 |
- Annotations
-
- Pseudoknot geometry (1)
- (1)
- Basepair signature
- cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.91 | Avg 0.45 | Max 0.91
Coloring options: