Motif HL_86889.1 Version HL_86889.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 2-10 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2JLT_001 | 2JLT | 0.0000 | 0 | A | R06 | G | 5 | G | 6 | U | 7 | C | 8 | C | 9 | C | 10 | A | 11 | G | 12 | A | 13 | C | 14 | cWW | cWW | ncWS | |
| 2 | HL_1F27_001 | 1F27 | 0.9145 | 0 | A | RNA (19-mer) | U | 7 | C | 8 | A | 9 | G | 10 | A | 11 | G | 12 | G | 13 | A | 14 | C | 15 | A | 16 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUCCCAGAC | 1 |
| UCAGAGGACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCCCAGA | 1 |
| CAGAGGAC | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_86889.1 | Only in the parent motif |
|---|---|---|---|
| HL_74686.1 Compare | HL_2JLT_001 | HL_1F27_001 | HL_3T4B_003, HL_2A64_006 |
| HL_16770.1 Compare | HL_1F27_001 | HL_2JLT_001 | HL_387D_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_86889.1 | Only in the child motif |
|---|---|---|---|
| HL_09641.1 Compare | HL_1F27_001 | HL_2JLT_001 | HL_387D_001 |
| HL_33223.1 Compare | HL_2JLT_001 | HL_1F27_001 | HL_3B31_001, HL_4CUX_041 |
- Annotations
- Basepair signature
- cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.91 | Avg 0.46 | Max 0.91
Coloring options: