Motif HL_17926.5 Version HL_17926.5 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 8-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4QLM_002 | 4QLM | 0.5033 | 1 | A | cyclic di-AMP riboswitch | U | 72 | C | 74 | U | 75 | C | 76 | C | 77 | U | 78 | U | 79 | C | 80 | G | 81 | cWW | ||
| 2 | HL_7RQB_002 | 7RQB | 0.4428 | 0 | 1A | LSU rRNA | C | 87 | G | 88 | G | 89 | U | 90 | A | 92 | G | 93 | C | 94 | G | 94|||A | G | 95 | cWW | ||
| 3 | HL_4WF9_002 | 4WF9 | 0.0000 | 0 | X | LSU rRNA | U | 87 | G | 88 | U | 89 | A | 90 | A | 91 | G | 92 | U | 93 | A | 94 | A | 95 | cWW | ||
| 4 | HL_5J7L_135 | 5J7L | 0.5650 | 0 | DA | LSU rRNA | U | 87 | G | 88 | A | 89 | U | 90 | A | 91 | U | 92 | G | 93 | A | 94 | A | 95 | cWW | ||
| 5 | HL_6UFJ_004 | 6UFJ | 0.8008 | 0 | C | RNA (50-MER) | G | 33 | C | 34 | U | 35 | C | 36 | A | 37 | A | 38 | A | 39 | G | 40 | C | 41 | cWW | cSH | |
| 6 | HL_5K7D_002 | 5K7D | 0.8256 | 0 | A | RNA 47-MER | G | 33 | C | 34 | C | 35 | C | 36 | U | 37 | A | 38 | A | 39 | G | 40 | C | 41 | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UACUCCUUCG | 1 |
| CGGUAGCGG | 1 |
| UGUAAGUAA | 1 |
| UGAUAUGAA | 1 |
| GCUCAAAGC | 1 |
| GCCCUAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUCCUUC | 1 |
| GGUAGCG | 1 |
| GUAAGUA | 1 |
| GAUAUGA | 1 |
| CUCAAAG | 1 |
| CCCUAAG | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.16 | Avg 0.56 | Max 0.87
Coloring options: