Motif HL_19905.2 Version HL_19905.2 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-2 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_045 | 2QBG | 0.5767 | 0 | B | 23S rRNA | C | 1728 | U | 1729 | C | 1730 | G | 1731 | ncSH | cWW | |
| 2 | HL_2AW7_002 | 2AW7 | 0.0000 | 0 | A | 16S ribosomal RNA | C | 83 | U | 84 | U | 85 | G | 86 | cWW | ||
| 3 | HL_2F8K_001 | 2F8K | 0.9654 | 0 | Mini UNCG | B | RNA (16-mer) | U | 6 | U | 7 | G | 8 | A | 9 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCG | 1 |
| CUUG | 1 |
| UUGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC | 1 |
| UU | 1 |
| UG | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_19905.2 | Only in the parent motif |
|---|---|---|---|
| HL_19905.1 Compare | HL_2AW7_002, HL_2QBG_045 | HL_2F8K_001 | |
| HL_75759.1 Compare | HL_2F8K_001 | HL_2AW7_002, HL_2QBG_045 | HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_2ZJR_039, HL_3V2F_009, HL_2QBG_041, HL_3U5H_040, HL_3U5H_072 |
Children motifs
| Child motif | Common motif instances | Only in HL_19905.2 | Only in the child motif |
|---|---|---|---|
| HL_19905.3 Compare | HL_2AW7_002, HL_2QBG_045 | HL_2F8K_001 | HL_4BPP_018 |
| HL_75759.3 Compare | HL_2F8K_001 | HL_2AW7_002, HL_2QBG_045 | HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_3V2F_009, HL_2QBG_041, HL_3U5H_040, HL_4IOA_038, HL_3U5H_072 |
- Annotations
-
- (2)
- Mini UNCG (1)
- Basepair signature
- cWW-R
- Heat map statistics
- Min 0.58 | Avg 0.56 | Max 0.99
Coloring options: