RNA 3D Hub //

Motif HL_20698.1 Version HL_20698.1 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 41-4
1 HL_7A0S_0247A0S0.20302X LSU rRNAU839G841A842G844cWW
2 HL_7RQB_0257RQB0.057221A LSU rRNAU826U828A829G831cWW
3 HL_5J7L_1575J7L0.00002DA LSU rRNAU826U828A829G831cWW
4 HL_4WF9_0254WF90.07002X LSU rRNAU871U873A874G876cWW
5 HL_4V9F_0264V9F0.200020 LSU rRNAU919G921A922G924cWW
6 HL_5TBW_0755TBW0.877434 5.8S rRNAC108A109C110G114cWW
7 HL_1H4S_0021H4S0.94173T tRNAU32U33C34A38cWW
8 HL_6CZR_0756CZR0.861021a SSU rRNAC187C188U189G192cWW
9 HL_6XH2_0016XH20.84021DTRANS-ACTIVATION RESPONSE ELEMENTC30U31G32G34cWW
10 HL_4LFB_0044LFB0.79112A SSU rRNAC190|||BC190|||CU190|||DG190|||GcWW
11 HL_4V88_2164V880.90512A6 SSU rRNAC1359A1360U1361G1364cWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUUAGG3
CCUUGG2
UUGAGG1
UCGAAG1
CACAUUG1
UUCGGGA1
CUGGG1
CAUUUG1
Non-Watson-Crick part of the motif
SequenceCounts
UUAG3
CUUG2
UGAG1
CGAA1
ACAUU1
UCGGG1
UGG1
AUUU1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusNew id, > 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (11)
    • Basepair signature
    cWW-F-F
    Heat map statistics
    Min 0.06 | Avg 0.54 | Max 0.97
    Help

    Coloring options:

    HL_7A0S_024:HL_7A0S_024 = 0HL_7A0S_024:HL_7RQB_025 = 0.1798HL_7A0S_024:HL_5J7L_157 = 0.203HL_7A0S_024:HL_4WF9_025 = 0.2197HL_7A0S_024:HL_4V9F_026 = 0.2002HL_7A0S_024:HL_5TBW_075 = 0.8769HL_7A0S_024:HL_1H4S_002 = 0.9667HL_7A0S_024:HL_6CZR_075 = 0.9186HL_7A0S_024:HL_6XH2_001 = 0.9289HL_7A0S_024:HL_4LFB_004 = 0.8652HL_7A0S_024:HL_4V88_216 = 0.9118HL_7RQB_025:HL_7A0S_024 = 0.1798HL_7RQB_025:HL_7RQB_025 = 0HL_7RQB_025:HL_5J7L_157 = 0.0572HL_7RQB_025:HL_4WF9_025 = 0.0607HL_7RQB_025:HL_4V9F_026 = 0.1886HL_7RQB_025:HL_5TBW_075 = 0.859HL_7RQB_025:HL_1H4S_002 = 0.9262HL_7RQB_025:HL_6CZR_075 = 0.8427HL_7RQB_025:HL_6XH2_001 = 0.8195HL_7RQB_025:HL_4LFB_004 = 0.7713HL_7RQB_025:HL_4V88_216 = 0.8826HL_5J7L_157:HL_7A0S_024 = 0.203HL_5J7L_157:HL_7RQB_025 = 0.0572HL_5J7L_157:HL_5J7L_157 = 0HL_5J7L_157:HL_4WF9_025 = 0.07HL_5J7L_157:HL_4V9F_026 = 0.2HL_5J7L_157:HL_5TBW_075 = 0.8774HL_5J7L_157:HL_1H4S_002 = 0.9417HL_5J7L_157:HL_6CZR_075 = 0.861HL_5J7L_157:HL_6XH2_001 = 0.8402HL_5J7L_157:HL_4LFB_004 = 0.7911HL_5J7L_157:HL_4V88_216 = 0.9051HL_4WF9_025:HL_7A0S_024 = 0.2197HL_4WF9_025:HL_7RQB_025 = 0.0607HL_4WF9_025:HL_5J7L_157 = 0.07HL_4WF9_025:HL_4WF9_025 = 0HL_4WF9_025:HL_4V9F_026 = 0.1959HL_4WF9_025:HL_5TBW_075 = 0.867HL_4WF9_025:HL_1H4S_002 = 0.9282HL_4WF9_025:HL_6CZR_075 = 0.8444HL_4WF9_025:HL_6XH2_001 = 0.8277HL_4WF9_025:HL_4LFB_004 = 0.7744HL_4WF9_025:HL_4V88_216 = 0.8941HL_4V9F_026:HL_7A0S_024 = 0.2002HL_4V9F_026:HL_7RQB_025 = 0.1886HL_4V9F_026:HL_5J7L_157 = 0.2HL_4V9F_026:HL_4WF9_025 = 0.1959HL_4V9F_026:HL_4V9F_026 = 0HL_4V9F_026:HL_5TBW_075 = 0.8566HL_4V9F_026:HL_1H4S_002 = 0.9211HL_4V9F_026:HL_6CZR_075 = 0.875HL_4V9F_026:HL_6XH2_001 = 0.9108HL_4V9F_026:HL_4LFB_004 = 0.8375HL_4V9F_026:HL_4V88_216 = 0.9027HL_5TBW_075:HL_7A0S_024 = 0.8769HL_5TBW_075:HL_7RQB_025 = 0.859HL_5TBW_075:HL_5J7L_157 = 0.8774HL_5TBW_075:HL_4WF9_025 = 0.867HL_5TBW_075:HL_4V9F_026 = 0.8566HL_5TBW_075:HL_5TBW_075 = 0HL_5TBW_075:HL_1H4S_002 = 0.2441HL_5TBW_075:HL_6CZR_075 = 0.2483HL_5TBW_075:HL_6XH2_001 = 0.6424HL_5TBW_075:HL_4LFB_004 = 0.2192HL_5TBW_075:HL_4V88_216 = 0.7956HL_1H4S_002:HL_7A0S_024 = 0.9667HL_1H4S_002:HL_7RQB_025 = 0.9262HL_1H4S_002:HL_5J7L_157 = 0.9417HL_1H4S_002:HL_4WF9_025 = 0.9282HL_1H4S_002:HL_4V9F_026 = 0.9211HL_1H4S_002:HL_5TBW_075 = 0.2441HL_1H4S_002:HL_1H4S_002 = 0HL_1H4S_002:HL_6CZR_075 = 0.2222HL_1H4S_002:HL_6XH2_001 = 0.3391HL_1H4S_002:HL_4LFB_004 = 0.2751HL_1H4S_002:HL_4V88_216 = 0.3955HL_6CZR_075:HL_7A0S_024 = 0.9186HL_6CZR_075:HL_7RQB_025 = 0.8427HL_6CZR_075:HL_5J7L_157 = 0.861HL_6CZR_075:HL_4WF9_025 = 0.8444HL_6CZR_075:HL_4V9F_026 = 0.875HL_6CZR_075:HL_5TBW_075 = 0.2483HL_6CZR_075:HL_1H4S_002 = 0.2222HL_6CZR_075:HL_6CZR_075 = 0HL_6CZR_075:HL_6XH2_001 = 0.2265HL_6CZR_075:HL_4LFB_004 = 0.1514HL_6CZR_075:HL_4V88_216 = 0.3388HL_6XH2_001:HL_7A0S_024 = 0.9289HL_6XH2_001:HL_7RQB_025 = 0.8195HL_6XH2_001:HL_5J7L_157 = 0.8402HL_6XH2_001:HL_4WF9_025 = 0.8277HL_6XH2_001:HL_4V9F_026 = 0.9108HL_6XH2_001:HL_5TBW_075 = 0.6424HL_6XH2_001:HL_1H4S_002 = 0.3391HL_6XH2_001:HL_6CZR_075 = 0.2265HL_6XH2_001:HL_6XH2_001 = 0HL_6XH2_001:HL_4LFB_004 = 0.1849HL_6XH2_001:HL_4V88_216 = 0.5518HL_4LFB_004:HL_7A0S_024 = 0.8652HL_4LFB_004:HL_7RQB_025 = 0.7713HL_4LFB_004:HL_5J7L_157 = 0.7911HL_4LFB_004:HL_4WF9_025 = 0.7744HL_4LFB_004:HL_4V9F_026 = 0.8375HL_4LFB_004:HL_5TBW_075 = 0.2192HL_4LFB_004:HL_1H4S_002 = 0.2751HL_4LFB_004:HL_6CZR_075 = 0.1514HL_4LFB_004:HL_6XH2_001 = 0.1849HL_4LFB_004:HL_4LFB_004 = 0HL_4LFB_004:HL_4V88_216 = 0.2964HL_4V88_216:HL_7A0S_024 = 0.9118HL_4V88_216:HL_7RQB_025 = 0.8826HL_4V88_216:HL_5J7L_157 = 0.9051HL_4V88_216:HL_4WF9_025 = 0.8941HL_4V88_216:HL_4V9F_026 = 0.9027HL_4V88_216:HL_5TBW_075 = 0.7956HL_4V88_216:HL_1H4S_002 = 0.3955HL_4V88_216:HL_6CZR_075 = 0.3388HL_4V88_216:HL_6XH2_001 = 0.5518HL_4V88_216:HL_4LFB_004 = 0.2964HL_4V88_216:HL_4V88_216 = 0HL_7A0S_024HL_7RQB_025HL_5J7L_157HL_4WF9_025HL_4V9F_026HL_5TBW_075HL_1H4S_002HL_6CZR_075HL_6XH2_001HL_4LFB_004HL_4V88_216Discrepancy0.000.200.400.600.80
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