Motif HL_20698.1 Version HL_20698.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_024 | 7A0S | 0.2030 | 2 | X | LSU rRNA | U | 839 | G | 841 | A | 842 | G | 844 | cWW | |
| 2 | HL_7RQB_025 | 7RQB | 0.0572 | 2 | 1A | LSU rRNA | U | 826 | U | 828 | A | 829 | G | 831 | cWW | |
| 3 | HL_5J7L_157 | 5J7L | 0.0000 | 2 | DA | LSU rRNA | U | 826 | U | 828 | A | 829 | G | 831 | cWW | |
| 4 | HL_4WF9_025 | 4WF9 | 0.0700 | 2 | X | LSU rRNA | U | 871 | U | 873 | A | 874 | G | 876 | cWW | |
| 5 | HL_4V9F_026 | 4V9F | 0.2000 | 2 | 0 | LSU rRNA | U | 919 | G | 921 | A | 922 | G | 924 | cWW | |
| 6 | HL_5TBW_075 | 5TBW | 0.8774 | 3 | 4 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | G | 114 | cWW | |
| 7 | HL_1H4S_002 | 1H4S | 0.9417 | 3 | T | tRNA | U | 32 | U | 33 | C | 34 | A | 38 | cWW | |
| 8 | HL_6CZR_075 | 6CZR | 0.8610 | 2 | 1a | SSU rRNA | C | 187 | C | 188 | U | 189 | G | 192 | cWW | |
| 9 | HL_6XH2_001 | 6XH2 | 0.8402 | 1 | D | TRANS-ACTIVATION RESPONSE ELEMENT | C | 30 | U | 31 | G | 32 | G | 34 | cWW | |
| 10 | HL_4LFB_004 | 4LFB | 0.7911 | 2 | A | SSU rRNA | C | 190|||B | C | 190|||C | U | 190|||D | G | 190|||G | cWW | |
| 11 | HL_4V88_216 | 4V88 | 0.9051 | 2 | A6 | SSU rRNA | C | 1359 | A | 1360 | U | 1361 | G | 1364 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUAGG | 3 |
| CCUUGG | 2 |
| UUGAGG | 1 |
| UCGAAG | 1 |
| CACAUUG | 1 |
| UUCGGGA | 1 |
| CUGGG | 1 |
| CAUUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAG | 3 |
| CUUG | 2 |
| UGAG | 1 |
| CGAA | 1 |
| ACAUU | 1 |
| UCGGG | 1 |
| UGG | 1 |
| AUUU | 1 |
Coloring options: