Motif HL_20743.1 Version HL_20743.1 of this group appears in releases 3.2 to 3.24
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 4-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3SKI_001 | 3SKI | 0.8068 | 1 | A | RNA (68-MER) | C | 39 | A | 40 | U | 41 | A | 42 | A | 43 | G | 45 | G | 46 | G | 47 | cWW | ncsS | |
| 2 | HL_3SKL_004 | 3SKL | 0.7847 | 1 | B | RNA (66-MER) | C | 38 | A | 39 | U | 40 | A | 41 | A | 42 | G | 44 | G | 45 | G | 46 | cWW | ||
| 3 | HL_3RKF_007 | 3RKF | 0.1545 | 1 | C | Guanine riboswitch | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | A | 37 | G | 38 | C | 39 | cWW | ||
| 4 | HL_5KPY_001 | 5KPY | 0.0000 | 1 | A | 5-hydroxytryptophan RNA aptamer | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs | |
| 5 | HL_1Y27_001 | 1Y27 | 0.1296 | 1 | X | Purine riboswitch | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs | |
| 6 | HL_4FEN_001 | 4FEN | 0.1656 | 1 | B | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUAUGGC | 3 |
| CAUAAUGGG | 2 |
| GGAUAUAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAUGG | 3 |
| AUAAUGG | 2 |
| GAUAUAG | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-cSS-R-R
- Heat map statistics
- Min 0.11 | Avg 0.42 | Max 0.85
Coloring options: