Motif HL_21392.1 Version HL_21392.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_039 | 4WF9 | 0.4014 | 3 | X | LSU rRNA | A | 1673 | U | 1674 | G | 1677 | A | 1679 | U | 1680 | U | 1681 | cWW | cwW |
| 2 | HL_5TBW_058 | 5TBW | 0.0000 | 3 | 1 | LSU rRNA | U | 2724 | U | 2725 | U | 2729 | G | 2730 | U | 2731 | G | 2732 | cWW | |
| 3 | HL_8C3A_059 | 8C3A | 0.0993 | 3 | 1 | LSU rRNA | U | 2696 | U | 2697 | U | 2701 | G | 2702 | U | 2703 | G | 2704 | cWW | ncwW |
| 4 | HL_3AL0_002 | 3AL0 | 0.6193 | 3 | E | tRNAGln | A | 31 | C | 32 | U | 35 | G | 36 | A | 38 | U | 39 | cWW | cWW |
| 5 | HL_3AKZ_011 | 3AKZ | 0.7536 | 3 | E | tRNAGln | A | 31 | C | 32 | U | 35 | G | 36 | A | 38 | U | 39 | cWW | ncSW |
| 6 | HL_4W90_004 | 4W90 | 0.7080 | 2 | C | cyclic di-AMP riboswitch | U | 13 | G | 14 | A | 16 | A | 17 | C | 19 | A | 20 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCAGUGUG | 2 |
| ACUCUGGAU | 2 |
| AUGAGAAUU | 1 |
| UGAAAUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGUGU | 2 |
| CUCUGGA | 2 |
| UGAGAAU | 1 |
| GAAAUC | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-cWW-F-F
- Heat map statistics
- Min 0.10 | Avg 0.53 | Max 0.99
Coloring options: