Motif HL_26075.1 Version HL_26075.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1M5O_003 | 1M5O | 0.6678 | 7 | E | RNA HAIRPIN RIBOZYME | C | 35 | A | 36 | U | 37 | G | 39 | G | 46 | cWW | |
| 2 | HL_3P49_001 | 3P49 | 0.0000 | 7 | A | Glycine riboswitch | C | 722 | A | 723 | U | 724 | G | 726 | G | 733 | cWW | |
| 3 | HL_2NZ4_005 | 2NZ4 | 0.2139 | 7 | Q | GlmS ribozyme | C | 17|||A | A | 17|||B | U | 17|||C | G | 17|||E | G | 17|||L | cWW | |
| 4 | HL_1S72_050 | 1S72 | 0.1871 | 0 | 0 | LSU rRNA | G | 1948 | G | 1949 | G | 1950 | G | 1951 | U | 1964 | cWW | |
| 5 | HL_1URN_002 | 1URN | 0.2113 | 7 | Q | RNA (21-mer) | C | 5 | A | 6 | U | 7 | G | 9 | G | 16 | cWW | |
| 6 | HL_3MUR_002 | 3MUR | 0.2181 | 7 | R | C92U mutant c-di-GMP riboswitch | C | 65 | A | 660 | U | 661 | G | 663 | G | 75 | cWW | |
| 7 | HL_1U6B_003 | 1U6B | 0.2264 | 7 | U1 small nuclear ribonucleoprotein A binding hairpin | B | 197-MER | C | 1002 | A | 1003 | U | 1004 | G | 1006 | G | 1013 | cWW |
| 8 | HL_3ADD_003 | 3ADD | 0.2230 | 1 | C | Selenocysteine transfer RNA | C | 47|||D | G | 47|||E | A | 47|||F | U | 47|||H | G | 47|||I | cWW | |
| 9 | HL_3CUN_002 | 3CUN | 0.2586 | 7 | C | RNA (92-MER) | C | 29 | A | 30 | U | 31 | G | 33 | G | 40 | cWW | |
| 10 | HL_1M5O_001 | 1M5O | 0.2573 | 7 | B | RNA HAIRPIN RIBOZYME | C | 35 | A | 36 | U | 37 | G | 39 | G | 46 | cWW | |
| 11 | HL_2NZ4_009 | 2NZ4 | 0.7580 | 7 | R | GlmS ribozyme | C | 17|||A | A | 17|||B | U | 17|||C | G | 17|||E | G | 17|||L | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUGCACUCCG | 9 |
| GGGGU | 1 |
| CGAGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUGCACUCC | 9 |
| GGG | 1 |
| GAGU | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_26075.1 | Only in the child motif |
|---|---|---|---|
| HL_26075.2 Compare | HL_3MUR_002, HL_2NZ4_009, HL_1M5O_003, HL_2NZ4_005, HL_1U6B_003, HL_1URN_002, HL_1M5O_001, HL_3CUN_002, HL_3ADD_003, HL_3P49_001 | HL_1S72_050 |
- Annotations
-
- (10)
- U1 small nuclear ribonucleoprotein A binding hairpin (1)
- Basepair signature
- Heat map statistics
- Min 0.07 | Avg 0.33 | Max 1.04
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