Motif HL_26075.2 Version HL_26075.2 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3CUN_002 | 3CUN | 0.7825 | 6 | C | RNA (92-MER) | C | 29 | A | 30 | U | 31 | U | 32 | G | 33 | G | 40 | cWW | |
| 2 | HL_3P49_001 | 3P49 | 0.0000 | 6 | A | Glycine riboswitch | C | 722 | A | 723 | U | 724 | U | 725 | G | 726 | G | 733 | cWW | |
| 3 | HL_2NZ4_009 | 2NZ4 | 0.4949 | 6 | R | GlmS ribozyme | C | 17|||A | A | 17|||B | U | 17|||C | U | 17|||D | G | 17|||E | G | 17|||L | cWW | |
| 4 | HL_1M5O_001 | 1M5O | 0.5111 | 6 | B | RNA HAIRPIN RIBOZYME | C | 35 | A | 36 | U | 37 | U | 38 | G | 39 | G | 46 | cWW | |
| 5 | HL_1U6B_003 | 1U6B | 0.5133 | 6 | U1 small nuclear ribonucleoprotein A binding hairpin | B | 197-MER | C | 1002 | A | 1003 | U | 1004 | U | 1005 | G | 1006 | G | 1013 | cWW |
| 6 | HL_2NZ4_005 | 2NZ4 | 0.5125 | 6 | Q | GlmS ribozyme | C | 17|||A | A | 17|||B | U | 17|||C | U | 17|||D | G | 17|||E | G | 17|||L | cWW | |
| 7 | HL_1M5O_003 | 1M5O | 0.5072 | 6 | E | RNA HAIRPIN RIBOZYME | C | 35 | A | 36 | U | 37 | U | 38 | G | 39 | G | 46 | cWW | |
| 8 | HL_3ADD_003 | 3ADD | 0.5235 | 0 | C | Selenocysteine transfer RNA | C | 47|||D | G | 47|||E | A | 47|||F | G | 47|||G | U | 47|||H | G | 47|||I | cWW | |
| 9 | HL_3MUR_002 | 3MUR | 0.5103 | 6 | R | C92U mutant c-di-GMP riboswitch | C | 65 | A | 660 | U | 661 | U | 662 | G | 663 | G | 75 | cWW | |
| 10 | HL_1URN_002 | 1URN | 0.5665 | 6 | Q | RNA (21-mer) | C | 5 | A | 6 | U | 7 | U | 8 | G | 9 | G | 16 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUGCACUCCG | 9 |
| CGAGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUGCACUCC | 9 |
| GAGU | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_26075.2 | Only in the parent motif |
|---|---|---|---|
| HL_26075.1 Compare | HL_3MUR_002, HL_2NZ4_009, HL_1M5O_003, HL_2NZ4_005, HL_1U6B_003, HL_1URN_002, HL_1M5O_001, HL_3CUN_002, HL_3ADD_003, HL_3P49_001 | HL_1S72_050 |
Children motifs
| Child motif | Common motif instances | Only in HL_26075.2 | Only in the child motif |
|---|---|---|---|
| HL_15603.1 Compare | HL_2NZ4_009, HL_1M5O_003, HL_1U6B_003, HL_1URN_002, HL_3CUN_002, HL_3P49_001 | HL_2NZ4_005, HL_3ADD_003, HL_1M5O_001, HL_3MUR_002 | HL_3UCZ_002, HL_1VBY_002 |
| HL_34027.1 Compare | HL_3ADD_003 | HL_3MUR_002, HL_2NZ4_009, HL_1M5O_003, HL_2NZ4_005, HL_1U6B_003, HL_1URN_002, HL_1M5O_001, HL_3CUN_002, HL_3P49_001 | HL_1MJI_001, HL_1S72_071, HL_2QBG_001, HL_4A1C_005, HL_3V2F_068, HL_3U5H_073 |
- Annotations
-
- (9)
- U1 small nuclear ribonucleoprotein A binding hairpin (1)
- Basepair signature
- Heat map statistics
- Min 0.07 | Avg 0.32 | Max 0.90
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