Motif HL_28567.3 Version HL_28567.3 of this group appears in releases 3.37 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	3-4
1	HL_2OEU_002	2OEU	0.7315	2	A	Hammerhead Ribozyme	C	25	C	26	A	27	U	30	A	31	G	32	cWW
2	HL_4KR9_002	4KR9	0.7187	0	M	RNA (39-MER)	G	19	G	20	A	21	A	22	A	23	C	24	cWW
3	HL_4XWF_001	4XWF	0.3142	0	A	ZMP/ZTP riboswitch	G	24	G	25	A	26	A	27	A	28	C	29	cWW
4	HL_6U8D_001	6U8D	0.0000	0	A	JIIIabc RNA (68-MER)	G	161	A	162	G	163	U	164	A	165	C	166	cWW	ncsS
5	HL_3ADD_003	3ADD	0.3594	0	C	Selenocysteine transfer RNA	C	47\|\|\|D	G	47\|\|\|E	A	47\|\|\|F	G	47\|\|\|G	U	47\|\|\|H	G	47\|\|\|I	cWW
6	HL_4RUM_001	4RUM	0.5279	1	A	NiCo riboswitch	C	27	A	28	G	29	G	31	C	32	G	33	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAAAC	2
CCAAAUAG	1
GAGUAC	1
CGAGUG	1
CAGAGCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAA	2
CAAAUA	1
AGUA	1
GAGU	1
AGAGC	1

Release history

Release	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-R-R-R
Heat map statistics: Min 0.31 | Avg 0.53 | Max 0.95

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