Motif HL_30784.2 Version HL_30784.2 of this group appears in releases 3.80 to 3.83
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_058 | 7A0S | 0.1716 | 5 | X | LSU rRNA | C | 2383 | G | 2384 | A | 2390 | A | 2391 | G | 2392 | cWW | tSH | |
| 2 | HL_4WF9_055 | 4WF9 | 0.1416 | 5 | X | LSU rRNA | C | 2431 | G | 2432 | A | 2438 | A | 2439 | G | 2440 | cWW | tSH | |
| 3 | HL_7RQB_059 | 7RQB | 0.0000 | 5 | 1A | LSU rRNA | C | 2404 | G | 2405 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH | |
| 4 | HL_5J7L_192 | 5J7L | 0.1278 | 5 | DA | LSU rRNA | U | 2404 | G | 2405 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH | |
| 5 | HL_7A0S_005 | 7A0S | 0.3401 | 1 | GNRA | X | LSU rRNA | C | 146 | G | 147 | A | 149 | A | 150 | G | 151 | cWW | ntSH |
| 6 | HL_3IGI_004 | 3IGI | 0.2656 | 2 | A | Group IIC intron | G | 135 | G | 136 | C | 139 | A | 140 | C | 141 | cWW | ntSH | |
| 7 | HL_6ASO_001 | 6ASO | 0.4608 | 2 | I | U6 snRNA | U | 70 | G | 71 | U | 74 | A | 75 | A | 76 | ncWW | tSH | |
| 8 | HL_4QLM_001 | 4QLM | 0.4103 | 1 | GNRA | A | cyclic di-AMP riboswitch | C | 54 | G | 55 | A | 57 | A | 58 | G | 59 | cWW | ntSH |
| 9 | HL_4LFB_002 | 4LFB | 0.4288 | 2 | A | SSU rRNA | G | 80 | U | 81 | U | 84 | A | 88 | C | 89 | cWW | ||
| 10 | HL_8DP3_003 | 8DP3 | 0.4892 | 1 | R | RNA (90-MER) | U | 62 | C | 63 | C | 65 | C | 66 | G | 67 | cWW | ||
| 11 | HL_4V9F_022 | 4V9F | 0.5076 | 1 | Other HL | 0 | LSU rRNA | U | 733 | U | 734 | A | 736 | A | 737 | G | 738 | cWW | |
| 12 | HL_1U9S_001 | 1U9S | 0.6652 | 2 | A | RIBONUCLEASE P | G | 84 | U | 85 | A | 87 | C | 88 | C | 90 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGUGGAAG | 2 |
| CGCAUGGAAG | 1 |
| UGAAUGGAAG | 1 |
| CGCAAG | 1 |
| GGAACAC | 1 |
| UGCAUAA | 1 |
| CGAAAG | 1 |
| GUUUUAC | 1 |
| UCACCG | 1 |
| UUCAAG | 1 |
| GUAACGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGUGGAA | 2 |
| GCAUGGAA | 1 |
| GAAUGGAA | 1 |
| GCAA | 1 |
| GAACA | 1 |
| GCAUA | 1 |
| GAAA | 1 |
| UUUUA | 1 |
| CACC | 1 |
| UCAA | 1 |
| UAACG | 1 |
- Annotations
-
- GNRA (2)
- Other HL (1)
- Basepair signature
- cWW-tSH-F
- Heat map statistics
- Min 0.13 | Avg 0.39 | Max 0.76
Coloring options: