#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 51-52-4
1 HL_7A0S_0587A0S0.17165X LSU rRNAC2383G2384A2390A2391G2392cWWtSH
2 HL_4WF9_0554WF90.14165X LSU rRNAC2431G2432A2438A2439G2440cWWtSH
3 HL_7RQB_0597RQB0.000051A LSU rRNAC2404G2405A2411A2412G2413cWWtSH
4 HL_5J7L_1925J7L0.12785DA LSU rRNAU2404G2405A2411A2412G2413cWWtSH
5 HL_7A0S_0057A0S0.34011GNRAX LSU rRNAC146G147A149A150G151cWWntSH
6 HL_3IGI_0043IGI0.26562AGroup IIC intronG135G136C139A140C141cWWntSH
7 HL_6ASO_0016ASO0.46082GNRAI U6 snRNAU70G71U74A75A76ncWWtSH
8 HL_4QLM_0014QLM0.41031GNRAA cyclic di-AMP riboswitchC54G55A57A58G59cWWntSH
9 HL_4LFB_0024LFB0.42882A SSU rRNAG80U81U84A88C89cWW
10 HL_8DP3_0038DP30.48921GNRAREnterovirus 5' cloverleaf cis-acting replication elementU62C63C65C66G67cWW
11 HL_4V9F_0224V9F0.50761GNRA0 LSU rRNAU733U734A736A737G738cWW
12 HL_1U9S_0011U9S0.66522GNRAARIBONUCLEASE PG84U85A87C88C90cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGUGUGGAAG2
CGCAUGGAAG1
UGAAUGGAAG1
CGCAAG1
GGAACAC1
UGCAUAA1
CGAAAG1
GUUUUAC1
UCACCG1
UUCAAG1
GUAACGC1
Non-Watson-Crick part of the motif
SequenceCounts
GUGUGGAA2
GCAUGGAA1
GAAUGGAA1
GCAA1
GAACA1
GCAUA1
GAAA1
UUUUA1
CACC1
UCAA1
UAACG1

Release history

Release3.803.813.823.83
Date2024-01-312024-02-282024-03-272024-04-24
StatusUpdated, 2 parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • GNRA (6)
  • (6)
  • Basepair signature
    cWW-tSH-F
    Heat map statistics
    Min 0.13 | Avg 0.39 | Max 0.76
    Help

    Coloring options:

    HL_7A0S_058:HL_7A0S_058 = 0HL_7A0S_058:HL_4WF9_055 = 0.1526HL_7A0S_058:HL_7RQB_059 = 0.1716HL_7A0S_058:HL_5J7L_192 = 0.1956HL_7A0S_058:HL_7A0S_005 = 0.4555HL_7A0S_058:HL_3IGI_004 = 0.4448HL_7A0S_058:HL_6ASO_001 = 0.54HL_7A0S_058:HL_4QLM_001 = 0.5174HL_7A0S_058:HL_4LFB_002 = 0.5163HL_7A0S_058:HL_8DP3_003 = 0.5731HL_7A0S_058:HL_4V9F_022 = 0.6146HL_7A0S_058:HL_1U9S_001 = 0.7513HL_4WF9_055:HL_7A0S_058 = 0.1526HL_4WF9_055:HL_4WF9_055 = 0HL_4WF9_055:HL_7RQB_059 = 0.1416HL_4WF9_055:HL_5J7L_192 = 0.1871HL_4WF9_055:HL_7A0S_005 = 0.3684HL_4WF9_055:HL_3IGI_004 = 0.3717HL_4WF9_055:HL_6ASO_001 = 0.4974HL_4WF9_055:HL_4QLM_001 = 0.4221HL_4WF9_055:HL_4LFB_002 = 0.4519HL_4WF9_055:HL_8DP3_003 = 0.5184HL_4WF9_055:HL_4V9F_022 = 0.5525HL_4WF9_055:HL_1U9S_001 = 0.7586HL_7RQB_059:HL_7A0S_058 = 0.1716HL_7RQB_059:HL_4WF9_055 = 0.1416HL_7RQB_059:HL_7RQB_059 = 0HL_7RQB_059:HL_5J7L_192 = 0.1278HL_7RQB_059:HL_7A0S_005 = 0.3401HL_7RQB_059:HL_3IGI_004 = 0.2656HL_7RQB_059:HL_6ASO_001 = 0.4608HL_7RQB_059:HL_4QLM_001 = 0.4103HL_7RQB_059:HL_4LFB_002 = 0.4288HL_7RQB_059:HL_8DP3_003 = 0.4892HL_7RQB_059:HL_4V9F_022 = 0.5076HL_7RQB_059:HL_1U9S_001 = 0.6652HL_5J7L_192:HL_7A0S_058 = 0.1956HL_5J7L_192:HL_4WF9_055 = 0.1871HL_5J7L_192:HL_7RQB_059 = 0.1278HL_5J7L_192:HL_5J7L_192 = 0HL_5J7L_192:HL_7A0S_005 = 0.3204HL_5J7L_192:HL_3IGI_004 = 0.2763HL_5J7L_192:HL_6ASO_001 = 0.4116HL_5J7L_192:HL_4QLM_001 = 0.4325HL_5J7L_192:HL_4LFB_002 = 0.4371HL_5J7L_192:HL_8DP3_003 = 0.4632HL_5J7L_192:HL_4V9F_022 = 0.4838HL_5J7L_192:HL_1U9S_001 = 0.6HL_7A0S_005:HL_7A0S_058 = 0.4555HL_7A0S_005:HL_4WF9_055 = 0.3684HL_7A0S_005:HL_7RQB_059 = 0.3401HL_7A0S_005:HL_5J7L_192 = 0.3204HL_7A0S_005:HL_7A0S_005 = 0HL_7A0S_005:HL_3IGI_004 = 0.2477HL_7A0S_005:HL_6ASO_001 = 0.3619HL_7A0S_005:HL_4QLM_001 = 0.2967HL_7A0S_005:HL_4LFB_002 = 0.3648HL_7A0S_005:HL_8DP3_003 = 0.3991HL_7A0S_005:HL_4V9F_022 = 0.3935HL_7A0S_005:HL_1U9S_001 = 0.5979HL_3IGI_004:HL_7A0S_058 = 0.4448HL_3IGI_004:HL_4WF9_055 = 0.3717HL_3IGI_004:HL_7RQB_059 = 0.2656HL_3IGI_004:HL_5J7L_192 = 0.2763HL_3IGI_004:HL_7A0S_005 = 0.2477HL_3IGI_004:HL_3IGI_004 = 0HL_3IGI_004:HL_6ASO_001 = 0.2352HL_3IGI_004:HL_4QLM_001 = 0.3865HL_3IGI_004:HL_4LFB_002 = 0.3797HL_3IGI_004:HL_8DP3_003 = 0.3498HL_3IGI_004:HL_4V9F_022 = 0.383HL_3IGI_004:HL_1U9S_001 = 0.5643HL_6ASO_001:HL_7A0S_058 = 0.54HL_6ASO_001:HL_4WF9_055 = 0.4974HL_6ASO_001:HL_7RQB_059 = 0.4608HL_6ASO_001:HL_5J7L_192 = 0.4116HL_6ASO_001:HL_7A0S_005 = 0.3619HL_6ASO_001:HL_3IGI_004 = 0.2352HL_6ASO_001:HL_6ASO_001 = 0HL_6ASO_001:HL_4QLM_001 = 0.322HL_6ASO_001:HL_4LFB_002 = 0.3913HL_6ASO_001:HL_8DP3_003 = 0.2701HL_6ASO_001:HL_4V9F_022 = 0.4026HL_6ASO_001:HL_1U9S_001 = 0.6057HL_4QLM_001:HL_7A0S_058 = 0.5174HL_4QLM_001:HL_4WF9_055 = 0.4221HL_4QLM_001:HL_7RQB_059 = 0.4103HL_4QLM_001:HL_5J7L_192 = 0.4325HL_4QLM_001:HL_7A0S_005 = 0.2967HL_4QLM_001:HL_3IGI_004 = 0.3865HL_4QLM_001:HL_6ASO_001 = 0.322HL_4QLM_001:HL_4QLM_001 = 0HL_4QLM_001:HL_4LFB_002 = 0.3329HL_4QLM_001:HL_8DP3_003 = 0.3297HL_4QLM_001:HL_4V9F_022 = 0.5658HL_4QLM_001:HL_1U9S_001 = 0.7209HL_4LFB_002:HL_7A0S_058 = 0.5163HL_4LFB_002:HL_4WF9_055 = 0.4519HL_4LFB_002:HL_7RQB_059 = 0.4288HL_4LFB_002:HL_5J7L_192 = 0.4371HL_4LFB_002:HL_7A0S_005 = 0.3648HL_4LFB_002:HL_3IGI_004 = 0.3797HL_4LFB_002:HL_6ASO_001 = 0.3913HL_4LFB_002:HL_4QLM_001 = 0.3329HL_4LFB_002:HL_4LFB_002 = 0HL_4LFB_002:HL_8DP3_003 = 0.281HL_4LFB_002:HL_4V9F_022 = 0.3919HL_4LFB_002:HL_1U9S_001 = 0.6935HL_8DP3_003:HL_7A0S_058 = 0.5731HL_8DP3_003:HL_4WF9_055 = 0.5184HL_8DP3_003:HL_7RQB_059 = 0.4892HL_8DP3_003:HL_5J7L_192 = 0.4632HL_8DP3_003:HL_7A0S_005 = 0.3991HL_8DP3_003:HL_3IGI_004 = 0.3498HL_8DP3_003:HL_6ASO_001 = 0.2701HL_8DP3_003:HL_4QLM_001 = 0.3297HL_8DP3_003:HL_4LFB_002 = 0.281HL_8DP3_003:HL_8DP3_003 = 0HL_8DP3_003:HL_4V9F_022 = 0.3355HL_8DP3_003:HL_1U9S_001 = 0.6467HL_4V9F_022:HL_7A0S_058 = 0.6146HL_4V9F_022:HL_4WF9_055 = 0.5525HL_4V9F_022:HL_7RQB_059 = 0.5076HL_4V9F_022:HL_5J7L_192 = 0.4838HL_4V9F_022:HL_7A0S_005 = 0.3935HL_4V9F_022:HL_3IGI_004 = 0.383HL_4V9F_022:HL_6ASO_001 = 0.4026HL_4V9F_022:HL_4QLM_001 = 0.5658HL_4V9F_022:HL_4LFB_002 = 0.3919HL_4V9F_022:HL_8DP3_003 = 0.3355HL_4V9F_022:HL_4V9F_022 = 0HL_4V9F_022:HL_1U9S_001 = 0.5842HL_1U9S_001:HL_7A0S_058 = 0.7513HL_1U9S_001:HL_4WF9_055 = 0.7586HL_1U9S_001:HL_7RQB_059 = 0.6652HL_1U9S_001:HL_5J7L_192 = 0.6HL_1U9S_001:HL_7A0S_005 = 0.5979HL_1U9S_001:HL_3IGI_004 = 0.5643HL_1U9S_001:HL_6ASO_001 = 0.6057HL_1U9S_001:HL_4QLM_001 = 0.7209HL_1U9S_001:HL_4LFB_002 = 0.6935HL_1U9S_001:HL_8DP3_003 = 0.6467HL_1U9S_001:HL_4V9F_022 = 0.5842HL_1U9S_001:HL_1U9S_001 = 0HL_7A0S_058HL_4WF9_055HL_7RQB_059HL_5J7L_192HL_7A0S_005HL_3IGI_004HL_6ASO_001HL_4QLM_001HL_4LFB_002HL_8DP3_003HL_4V9F_022HL_1U9S_001Discrepancy0.000.200.400.60
    Copyright 2025 BGSU RNA group. Page generated in 0.3143 s
    Application loaded.