Motif HL_31147.2 Version HL_31147.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-8 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4CUX_041 | 4CUX | 0.4862 | 1 | Z | C | 6180 | C | 6181 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6195 | G | 6196 | cWW | ||
| 2 | HL_3B31_001 | 3B31 | 0.0000 | 1 | A | A | 6184 | U | 6185 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | U | 6193 | cWW | ||
| 3 | HL_387D_001 | 387D | 0.4956 | 1 | A | G | 4 | A | 5 | G | 7 | U | 8 | G | 9 | C | 10 | A | 11 | A | 12 | C | 13 | cWW | tWW | |
| 4 | HL_4W21_066 | 4W21 | 0.6309 | 1 | 5 | G | 4644 | C | 4645 | G | 4647 | A | 4648 | G | 4649 | G | 4650 | A | 4651 | G | 4652 | C | 4653 | ncBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUAGGUAGG | 1 |
| AUUAGGUAGU | 1 |
| GAAGUGCAAC | 1 |
| GCUGAGGAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAGGUAG | 1 |
| UUAGGUAG | 1 |
| AAGUGCAA | 1 |
| CUGAGGAG | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_31147.2 | Only in the parent motif |
|---|---|---|---|
| HL_31147.1 Compare | HL_387D_001, HL_3B31_001, HL_4CUX_041 | HL_4W21_066 | HL_1VWW_066 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.49 | Avg 0.43 | Max 0.67
Coloring options: