Motif HL_31581.2 Version HL_31581.2 of this group appears in releases 3.16 to 3.26

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10		11		12	1-12	9-10
1	HL_4PRF_002	4PRF	0.0682		B	Hepatitis Delta virus ribozyme	C	147	A	148	U	149	U	150	G	151	C	152	A	153	C	154	U	155	C	156	C	157	G	158	cWW	cSH
2	HL_4PR6_002	4PR6	0.0000		B	HDV RIBOZYME SELF-CLEAVED	C	147	A	148	U	149	U	150	G	151	C	152	A	153	C	154	U	155	C	156	C	157	G	158	cWW	cSH
3	HL_5DDO_004	5DDO	0.7495	U1 small nuclear ribonucleoprotein A binding hairpin	B	L-glutamine riboswitch (58-MER)	C	34	A	35	U	36	U	37	G	38	C	39	A	40	C	41	U	42	C	43	C	44	G	45	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAUUGCACUCCG	3

Non-Watson-Crick part of the motif

Sequence	Counts
AUUGCACUCC	3

Release history

Release	3.16	3.17	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26
Date	2019-03-08	2019-04-05	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (2)
U1 small nuclear ribonucleoprotein A binding hairpin (1)
Basepair signature: cWW-R-cSH-R-R-R-R-R-R
Heat map statistics: Min 0.07 | Avg 0.35 | Max 0.75

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Coloring options: Nucleotide numbers

Motif HL_31581.2 Version HL_31581.2 of this group appears in releases 3.16 to 3.26 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_31581.2 Version HL_31581.2 of this group appears in releases 3.16 to 3.26

Download

Csv

Json