Motif HL_31583.1 Version HL_31583.1 of this group appears in releases 3.58 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-4
1	HL_4PQV_002	4PQV	0.0000	1	Pseudoknot geometry	A	Flavivirus 3' UTR stem loop IV	C	28	G	29	C	30	C	31	G	32	G	34	cWW
2	HL_7RQB_065	7RQB	0.8915	0	Other HL (H)	1A	LSU rRNA	C	2701	U	2702	C	2703	C	2704	A	2705	G	2706	cWW	cSH

3D structures

Complete motif including flanking bases

Sequence	Counts
CGCCGAG	1
CUCCAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GCCGA	1
UCCA	1

Release history

Release	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Pseudoknot geometry (1)
Other HL (H) (1)
Basepair signature: cWW-R-cSH-R
Heat map statistics: Min 0.89 | Avg 0.45 | Max 0.89

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