Motif HL_31585.1 Version HL_31585.1 of this group appears in releases 3.91 to 3.92
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6JXM_002 | 6JXM | 0.5968 | 3 | B | tRNA | G | 41 | A | 45 | A | 46 | A | 47 | C | 48 | cWW | |
| 2 | HL_4LFB_002 | 4LFB | 0.5033 | 2 | A | SSU rRNA | G | 80 | U | 83 | U | 84 | A | 88 | C | 89 | cWW | |
| 3 | HL_8P9A_173 | 8P9A | 0.7527 | 3 | AR | LSU rRNA | A | 2897 | G | 2901 | A | 2902 | A | 2903 | U | 2904 | cWW | |
| 4 | HL_9DFE_059 | 9DFE | 0.6293 | 3 | 1A | LSU rRNA | U | 2528 | G | 2532 | A | 2533 | A | 2534 | G | 2535 | cWW | |
| 5 | HL_5J7L_194 | 5J7L | 0.6932 | 3 | DA | LSU rRNA | U | 2528 | G | 2532 | U | 2533 | A | 2534 | G | 2535 | cWW | |
| 6 | HL_4WF9_057 | 4WF9 | 0.7196 | 3 | X | LSU rRNA | U | 2555 | G | 2559 | U | 2560 | C | 2561 | G | 2562 | cWW | |
| 7 | HL_7A0S_060 | 7A0S | 0.6705 | 3 | X | LSU rRNA | U | 2507 | G | 2511 | A | 2512 | A | 2513 | G | 2514 | cWW | |
| 8 | HL_4V9F_063 | 4V9F | 0.6770 | 3 | 0 | LSU rRNA | U | 2563 | G | 2567 | A | 2568 | A | 2569 | G | 2570 | cWW | |
| 9 | HL_7YSE_002 | 7YSE | 0.4600 | 2 | Pseudoknot geometry | E | tRNA | U | 32 | C | 35 | C | 36 | A | 37 | A | 38 | cWW |
| 10 | HL_4LX6_002 | 4LX6 | 0.0000 | 3 | A | Purine riboswitch | G | 46 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | |
| 11 | HL_4XNR_002 | 4XNR | 0.1037 | 3 | X | Purine riboswitch | G | 46 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | |
| 12 | HL_1Y26_002 | 1Y26 | 0.1176 | 3 | X | Purine riboswitch | G | 46 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | |
| 13 | HL_1Y27_002 | 1Y27 | 0.1137 | 3 | X | Purine riboswitch | G | 46 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | |
| 14 | HL_4FEN_002 | 4FEN | 0.1232 | 3 | B | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | G | 46 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | |
| 15 | HL_3RKF_008 | 3RKF | 0.1763 | 3 | C | Guanine riboswitch | G | 46 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | |
| 16 | HL_3LA5_002 | 3LA5 | 0.1632 | 3 | A | Purine riboswitch | G | 46 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | |
| 17 | HL_7TZS_001 | 7TZS | 0.4726 | 2 | X | TPP riboswitch (THI element) | C | 27 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | |
| 18 | HL_5VPO_138 | 5VPO | 0.5636 | 3 | XV | P-site ASL SufA6 | U | 32 | G | 35 | G | 36 | 1MG | 37 | A | 39 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUCUAC | 5 |
| UGAAGAAG | 2 |
| GCUUCCAC | 2 |
| GCUAAAAC | 1 |
| GUUUUAC | 1 |
| AGCAGAAU | 1 |
| UGAAGUAG | 1 |
| UGUAGUCG | 1 |
| UGCAGAAG | 1 |
| UUGCCAA | 1 |
| CUGCGUG | 1 |
| UUCGGGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUCUA | 5 |
| GCAGAA | 2 |
| GAAGAA | 2 |
| CUUCCA | 2 |
| CUAAAA | 1 |
| UUUUA | 1 |
| GAAGUA | 1 |
| GUAGUC | 1 |
| UGCCA | 1 |
| UGCGU | 1 |
| UCGG(1MG)G | 1 |
- Annotations
-
- (17)
- Pseudoknot geometry (1)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.50 | Max 0.86
Coloring options: