Motif HL_64371.1 Version HL_64371.1 of this group appears in releases 0.3 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2A64_006 | 2A64 | 0.4533 | 1 | A | ribonuclease P RNA | C | 313 | G | 314 | G | 315 | G | 317 | C | 318 | A | 319 | U | 320 | G | 321 | C | 322 | A | 323 | G | 324 | cWW | ntSH |
| 2 | HL_3DHS_005 | 3DHS | 0.0000 | 1 | A | RNase P RNA | C | 313 | G | 314 | G | 315 | G | 317 | C | 318 | A | 319 | U | 320 | G | 321 | C | 322 | A | 323 | G | 324 | cWW | ntSH |
| 3 | HL_3IVK_006 | 3IVK | 0.6010 | 1 | C | class I ligase product | G | 1 | G | 2 | A | 3 | C | 5||A | A | 6 | C | 7 | U | 8 | A | 9 | U | 10 | A | 11 | C | 12 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGCGCAUGCAG | 2 |
| GGAACACUAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCGCAUGCA | 2 |
| GAACACUAUA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 |
|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_64371.1 | Only in the parent motif |
|---|---|---|---|
| HL_77652.1 Compare | HL_3DHS_005 | HL_2A64_006, HL_3IVK_006 | HL_2ZJR_002, HL_3PYO_067 |
| HL_32207.1 Compare | HL_2A64_006 | HL_3DHS_005, HL_3IVK_006 | HL_2GDI_001, HL_3PYO_062, HL_2GDI_003, HL_2ZJR_051, HL_3R4F_002, HL_2QBG_064, HL_3PYO_053, HL_3O58_055, HL_2ZJR_060, HL_3O58_064, HL_2XZM_029, HL_1S72_055, HL_2QBG_055, HL_1FJG_002 |
| HL_32280.1 Compare | HL_3IVK_006 | HL_3DHS_005, HL_2A64_006 | HL_3IVK_001, HL_3PYO_059, HL_2QBG_061, HL_2ZJR_057 |
Children motifs
| Child motif | Common motif instances | Only in HL_64371.1 | Only in the child motif |
|---|---|---|---|
| HL_64371.2 Compare | HL_3DHS_005, HL_3IVK_006 | HL_2A64_006 | |
| HL_74686.1 Compare | HL_2A64_006 | HL_3DHS_005, HL_3IVK_006 | HL_2JLT_001, HL_3T4B_003 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.45 | Avg 0.43 | Max 0.86
Coloring options: