Motif HL_32280.1 Version HL_32280.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_061 | 2QBG | 0.0000 | 1 | B | 23S rRNA | U | 2404 | G | 2405 | A | 2407 | U | 2408 | G | 2409 | G | 2410 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH |
| 2 | HL_3IVK_001 | 3IVK | 0.1807 | 3 | M | class I ligase product | G | 1 | G | 2 | A | 6 | C | 7 | U | 8 | A | 9 | U | 10 | A | 11 | C | 12 | cWW | tSH |
| 3 | HL_3IVK_006 | 3IVK | 0.2018 | 3 | C | class I ligase product | G | 1 | G | 2 | A | 6 | C | 7 | U | 8 | A | 9 | U | 10 | A | 11 | C | 12 | cWW | tSH |
| 4 | HL_2ZJR_057 | 2ZJR | 0.5062 | 1 | X | LSU rRNA | C | 2383 | G | 2384 | G | 2386 | U | 2387 | G | 2388 | G | 2389 | A | 2390 | A | 2391 | G | 2392 | cWW | tSH |
| 5 | HL_3PYO_059 | 3PYO | 0.5067 | 1 | A | 23S ribosomal RNA | C | 2404 | G | 2405 | G | 2407 | U | 2408 | G | 2409 | G | 2410 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAACACUAUAC | 2 |
| CGUGUGGAAG | 2 |
| UGAAUGGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAACACUAUA | 2 |
| GUGUGGAA | 2 |
| GAAUGGAA | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_32280.1 | Only in the child motif |
|---|---|---|---|
| HL_90579.1 Compare | HL_2QBG_061, HL_2ZJR_057 | HL_3IVK_001, HL_3PYO_059, HL_3IVK_006 | HL_3V2F_057 |
| HL_64371.1 Compare | HL_3IVK_006 | HL_3IVK_001, HL_3PYO_059, HL_2QBG_061, HL_2ZJR_057 | HL_3DHS_005, HL_2A64_006 |
Coloring options: