Motif HL_32458.3 Version HL_32458.3 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_219 | 4V88 | 0.5956 | 3 | A6 | SSU rRNA | A | 1550 | U | 1551 | U | 1552 | G | 1553 | U | 1554 | A | 1555 | A | 1556 | U | 1560 | U | 1561 | cWW | ncWH | tWH | |
| 2 | HL_4V9I_040 | 4V9I | 0.0000 | 2 | AY | tRNA | C | 52 | A | 53 | A | 54 | C | 55 | U | 56 | C | 57 | U | 58 | C | 61 | G | 62 | cWW | ncWW | ||
| 3 | HL_4V7M_040 | 4V7M | 0.4740 | 2 | AY | tRNA | G | 51 | G | 52 | U | 53 | U | 54 | C | 55 | G | 56 | A | 57 | C | 60 | C | 61 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUGUAAUUAUU | 1 |
| CAACUCUACCG | 1 |
| GGUUCGAAUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGUAAUUAU | 1 |
| AACUCUACC | 1 |
| GUUCGAAUC | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-R-R-tWH-R
- Heat map statistics
- Min 0.47 | Avg 0.39 | Max 0.66
Coloring options: